Started by user <a href='/jenkins/user/huebler' class='jenkins-table__link model-link model-link--float'>Gunther Huebler</a>
Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials larsongroupsysadmin github token
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision ec70668f175a08f982ca25797a9c7367f10e03d6 (refs/remotes/origin/master)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f ec70668f175a08f982ca25797a9c7367f10e03d6 # timeout=10
Commit message: "Removed readiopdata_core to prepare for git subtrees"
 &gt; git rev-list --no-walk 4aa411aa309abec014934f1589d435a83a9a4bec # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Update sys_admin Repo">[Pipeline] { (Update sys_admin Repo)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Python Test">[Pipeline] { (Run Python Test)
</span><span class="pipeline-new-node" nodeId="19" startId="19" enclosingId="18">[Pipeline] lock
</span><span class="pipeline-node-19">Trying to acquire lock on [Resource: GPU_built-in]
Resource [GPU_built-in] did not exist. Created.
Lock acquired on [Resource: GPU_built-in]
</span><span class="pipeline-new-node" nodeId="20" startId="20" enclosingId="19">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="21" enclosingId="20">[Pipeline] sh
</span><span class="pipeline-node-21">+ ulimit -s 8388608
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
CMake Error at src/Input_fields/CMakeLists.txt:17 (add_library):
  Cannot find source file:

    ../readiopdata_core/readiopdata_core_module.F90

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .mpp .m .M .mm .ixx .cppm .h
  .hh .h++ .hm .hpp .hxx .in .txx .f .F .for .f77 .f90 .f95 .f03 .hip .ispc


CMake Error at src/Input_fields/CMakeLists.txt:17 (add_library):
  No SOURCES given to target: input_fields_lib


CMake Generate step failed.  Build files cannot be regenerated correctly.
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
Directory 1 is ec70668f175a08f982ca25797a9c7367f10e03d6
Directory 2 is 1b17c7eb82913aa29b80cb94f5280c9a81fb162f
Using reporting threshold:  0.0 


The following cases will be compared: []

No comparable netCDF files were found in the provided directories.
Directory 1 is ec70668f175a08f982ca25797a9c7367f10e03d6
Directory 2 is 1b17c7eb82913aa29b80cb94f5280c9a81fb162f
Using reporting threshold:  0.0 


The following cases will be compared: []

No comparable netCDF files were found in the provided directories.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test

Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>

Output Save Mode: all

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm.py -multicol 4 arm', '\npython run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs', '\npython run_scripts/run_scm.py -multicol 4 cobra', '\npython run_scripts/run_scm.py -multicol 4 mpace_b', '\npython run_scripts/run_scm.py -multicol 4 gabls3']

Diffing command: run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: ec70668f175a08f982ca25797a9c7367f10e03d6

Checking Commit: ec70668f175a08f982ca25797a9c7367f10e03d6
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out ec70668f175a08f982ca25797a9c7367f10e03d6
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'python run_scripts/run_scm.py -multicol 4 arm'
	Running: 'python run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs'
	Running: 'python run_scripts/run_scm.py -multicol 4 cobra'
	Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b'
	Running: 'python run_scripts/run_scm.py -multicol 4 gabls3'
	Checking out 1b17c7eb82913aa29b80cb94f5280c9a81fb162f
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'python run_scripts/run_scm.py -multicol 4 arm'
	Running: 'python run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs'
	Running: 'python run_scripts/run_scm.py -multicol 4 cobra'
	Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b'
	Running: 'python run_scripts/run_scm.py -multicol 4 gabls3'
	Diffing: 'run_scripts/run_bindiff_all.py ec70668f175a08f982ca25797a9c7367f10e03d6 1b17c7eb82913aa29b80cb94f5280c9a81fb162f'
	ISSUE WITH COMMIT DETECTED: ec70668f175a08f982ca25797a9c7367f10e03d6 differs from 1b17c7eb82913aa29b80cb94f5280c9a81fb162f

Finding all BIT_CHANGING commits in range: 1b17c7eb82913aa29b80cb94f5280c9a81fb162f...ec70668f175a08f982ca25797a9c7367f10e03d6
	Output from ec70668f175a08f982ca25797a9c7367f10e03d6 already saved
	Output from 1b17c7eb82913aa29b80cb94f5280c9a81fb162f already saved
	Diffing: 'run_scripts/run_bindiff_all.py ec70668f175a08f982ca25797a9c7367f10e03d6 1b17c7eb82913aa29b80cb94f5280c9a81fb162f'
	Found:
		ec70668f175a08f982ca25797a9c7367f10e03d6

=============================== Test Results ===============================

Commit Range Checked = 1b17c7eb82913aa29b80cb94f5280c9a81fb162f...ec70668f175a08f982ca25797a9c7367f10e03d6

New Unresolved Commits:
	ec70668f175a08f982ca25797a9c7367f10e03d6

No fake BIT_CHANGING commits found.

Remaining Unresolved Commits (oldest commit is listed first):
	ec70668f175a08f982ca25797a9c7367f10e03d6

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: ec70668f175a08f982ca25797a9c7367f10e03d6


Saving into BaselineCommit: ec70668f175a08f982ca25797a9c7367f10e03d6

=============================== Cleanup ===============================

Not removing any generated output.
	RENAMING ec70668f175a08f982ca25797a9c7367f10e03d6 to latest_revision_validated_ec70668f175a08f982ca25797a9c7367f10e03d6

================== Unresolved Commit Status ==================

Remaining Unresolved Commits (oldest commit is listed first):
	ec70668f175a08f982ca25797a9c7367f10e03d6

Exiting with code: 1
</span><span class="pipeline-new-node" nodeId="22" startId="20">[Pipeline] }
</span><span class="pipeline-node-22">Lock released on resource [Resource: GPU_built-in]
</span><span class="pipeline-new-node" nodeId="23" startId="19">[Pipeline] // lock
</span><span class="pipeline-new-node" nodeId="24" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="25" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="26" startId="26" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="27" startId="27" enclosingId="26" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="28" startId="28" enclosingId="27">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="29" startId="29" enclosingId="28">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="30" enclosingId="29">[Pipeline] emailext
</span><span class="pipeline-node-30">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="31" startId="29">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="32" startId="28">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="33" startId="27">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="34" startId="26">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="35" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="36" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="37" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="38" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="39" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE