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+ ulimit -s 8388608
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
CMake Error at src/Input_fields/CMakeLists.txt:17 (add_library):
  Cannot find source file:

    ../readiopdata_core/readiopdata_core_module.F90

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .mpp .m .M .mm .ixx .cppm .h
  .hh .h++ .hm .hpp .hxx .in .txx .f .F .for .f77 .f90 .f95 .f03 .hip .ispc


CMake Error at src/Input_fields/CMakeLists.txt:17 (add_library):
  No SOURCES given to target: input_fields_lib


CMake Generate step failed.  Build files cannot be regenerated correctly.
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/../install/latest is not an install directory (did you re-compile?)
Directory 1 is ec70668f175a08f982ca25797a9c7367f10e03d6
Directory 2 is 1b17c7eb82913aa29b80cb94f5280c9a81fb162f
Using reporting threshold:  0.0 


The following cases will be compared: []

No comparable netCDF files were found in the provided directories.
Directory 1 is ec70668f175a08f982ca25797a9c7367f10e03d6
Directory 2 is 1b17c7eb82913aa29b80cb94f5280c9a81fb162f
Using reporting threshold:  0.0 


The following cases will be compared: []

No comparable netCDF files were found in the provided directories.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test

Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git

Output Save Mode: all

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm.py -multicol 4 arm', '\npython run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs', '\npython run_scripts/run_scm.py -multicol 4 cobra', '\npython run_scripts/run_scm.py -multicol 4 mpace_b', '\npython run_scripts/run_scm.py -multicol 4 gabls3']

Diffing command: run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: ec70668f175a08f982ca25797a9c7367f10e03d6

Checking Commit: ec70668f175a08f982ca25797a9c7367f10e03d6
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out ec70668f175a08f982ca25797a9c7367f10e03d6
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'python run_scripts/run_scm.py -multicol 4 arm'
	Running: 'python run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs'
	Running: 'python run_scripts/run_scm.py -multicol 4 cobra'
	Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b'
	Running: 'python run_scripts/run_scm.py -multicol 4 gabls3'
	Checking out 1b17c7eb82913aa29b80cb94f5280c9a81fb162f
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'python run_scripts/run_scm.py -multicol 4 arm'
	Running: 'python run_scripts/run_scm.py -override l_lh_straight_mc=true -multicol 4 rico_silhs'
	Running: 'python run_scripts/run_scm.py -multicol 4 cobra'
	Running: 'python run_scripts/run_scm.py -multicol 4 mpace_b'
	Running: 'python run_scripts/run_scm.py -multicol 4 gabls3'
	Diffing: 'run_scripts/run_bindiff_all.py ec70668f175a08f982ca25797a9c7367f10e03d6 1b17c7eb82913aa29b80cb94f5280c9a81fb162f'
	ISSUE WITH COMMIT DETECTED: ec70668f175a08f982ca25797a9c7367f10e03d6 differs from 1b17c7eb82913aa29b80cb94f5280c9a81fb162f

Finding all BIT_CHANGING commits in range: 1b17c7eb82913aa29b80cb94f5280c9a81fb162f...ec70668f175a08f982ca25797a9c7367f10e03d6
	Output from ec70668f175a08f982ca25797a9c7367f10e03d6 already saved
	Output from 1b17c7eb82913aa29b80cb94f5280c9a81fb162f already saved
	Diffing: 'run_scripts/run_bindiff_all.py ec70668f175a08f982ca25797a9c7367f10e03d6 1b17c7eb82913aa29b80cb94f5280c9a81fb162f'
	Found:
		ec70668f175a08f982ca25797a9c7367f10e03d6

=============================== Test Results ===============================

Commit Range Checked = 1b17c7eb82913aa29b80cb94f5280c9a81fb162f...ec70668f175a08f982ca25797a9c7367f10e03d6

New Unresolved Commits:
	ec70668f175a08f982ca25797a9c7367f10e03d6

No fake BIT_CHANGING commits found.

Remaining Unresolved Commits (oldest commit is listed first):
	ec70668f175a08f982ca25797a9c7367f10e03d6

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: ec70668f175a08f982ca25797a9c7367f10e03d6


Saving into BaselineCommit: ec70668f175a08f982ca25797a9c7367f10e03d6

=============================== Cleanup ===============================

Not removing any generated output.
	RENAMING ec70668f175a08f982ca25797a9c7367f10e03d6 to latest_revision_validated_ec70668f175a08f982ca25797a9c7367f10e03d6

================== Unresolved Commit Status ==================

Remaining Unresolved Commits (oldest commit is listed first):
	ec70668f175a08f982ca25797a9c7367f10e03d6

Exiting with code: 1