+ ulimit -s 8388608
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
CMake Warning:
Manually-specified variables were not used by the project:
NetCDF_C_INCLUDE_DIR
NetCDF_C_LIBRARY
NetCDF_Fortran_INCLUDE_DIR
NetCDF_Fortran_LIBRARY
Directory 1 is 02babc6b5a46bda3075bf071426fa20bf200a43b
Directory 2 is 0ccbf4f61f326437ea971ff5eca1eb570e8e4711
Using reporting threshold: 0.0
The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']
================================================ arm ================================================
>The linux diff detected differences in arm_stats.nc<
>>Differences above threshold were detected in the common fields in file arm_stats.nc<<
>>>Differences in common variables detected for case arm<<<
=====================================================================================================
================================================ cobra ================================================
>The linux diff detected differences in cobra_stats.nc<
>>Differences above threshold were detected in the common fields in file cobra_stats.nc<<
>>>Differences in common variables detected for case cobra<<<
=====================================================================================================
================================================ gabls3 ================================================
>The linux diff detected differences in gabls3_stats.nc<
>>Differences above threshold were detected in the common fields in file gabls3_stats.nc<<
>>>Differences in common variables detected for case gabls3<<<
=====================================================================================================
================================================ mpace_b ================================================
>The linux diff detected differences in mpace_b_stats.nc<
>>Differences above threshold were detected in the common fields in file mpace_b_stats.nc<<
>>>Differences in common variables detected for case mpace_b<<<
=====================================================================================================
================================================ rico_silhs ================================================
>No differences detected by the linux diff in rico_silhs_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico_silhs.<<<
=====================================================================================================
SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 1 cases ['rico_silhs']
Fail: 4 cases ['arm', 'cobra', 'gabls3', 'mpace_b']
Directory 1 is 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
Directory 2 is 02babc6b5a46bda3075bf071426fa20bf200a43b
Using reporting threshold: 0.0
The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']
================================================ arm ================================================
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<
=====================================================================================================
================================================ cobra ================================================
>No differences detected by the linux diff in cobra_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case cobra.<<<
=====================================================================================================
================================================ gabls3 ================================================
>No differences detected by the linux diff in gabls3_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3.<<<
=====================================================================================================
================================================ mpace_b ================================================
>No differences detected by the linux diff in mpace_b_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case mpace_b.<<<
=====================================================================================================
================================================ rico_silhs ================================================
>No differences detected by the linux diff in rico_silhs_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico_silhs.<<<
=====================================================================================================
SUMMARY:
Linux diff did not detect any differences in the compared files.
Pass: 5 cases ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']
Fail: 0 cases []
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: all
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 arm', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 rico_silhs', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 cobra', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 mpace_b', '\npython run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 gabls3']
Diffing command: run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 02babc6b5a46bda3075bf071426fa20bf200a43b
Found: BIT_CHANGING
Parsing message from commit: afbbe1126523c6ff7a4bb8091f72a242280490ba
Parsing message from commit: 8ab3902e812c2883976b4f1f57c085d682666d92
Parsing message from commit: c743a1427c73d47a5515a8d34c6de40cc266a3fd
Parsing message from commit: 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
Checking Commit: 02babc6b5a46bda3075bf071426fa20bf200a43b
Checking out 02babc6b5a46bda3075bf071426fa20bf200a43b
Running: 'python compile.py -gpu openacc -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 arm'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 rico_silhs'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 cobra'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 mpace_b'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 gabls3'
Checking out 0ccbf4f61f326437ea971ff5eca1eb570e8e4711
Running: 'python compile.py -gpu openacc -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 arm'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 rico_silhs'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 cobra'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 mpace_b'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 gabls3'
Diffing: 'run_scripts/run_bindiff_all.py 02babc6b5a46bda3075bf071426fa20bf200a43b 0ccbf4f61f326437ea971ff5eca1eb570e8e4711'
Commit '02babc6b5a46bda3075bf071426fa20bf200a43b' is BIT_CHANGING and properly labelled as such.
Checking Commit: afbbe1126523c6ff7a4bb8091f72a242280490ba
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 8ab3902e812c2883976b4f1f57c085d682666d92
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: c743a1427c73d47a5515a8d34c6de40cc266a3fd
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
Running: final commit to check, not labelled BIT_CHANGING
Checking out 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
Running: 'python compile.py -gpu openacc -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 arm'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 rico_silhs'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 cobra'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 mpace_b'
Running: 'python run_scripts/run_scm.py -override lh_straight_mc=true -multicol 4 gabls3'
Output from 02babc6b5a46bda3075bf071426fa20bf200a43b already saved
Diffing: 'run_scripts/run_bindiff_all.py 7e9b710922cae26f2bcaf92b858ba00bc6b5f040 02babc6b5a46bda3075bf071426fa20bf200a43b'
=============================== Test Results ===============================
Commit Range Checked = 0ccbf4f61f326437ea971ff5eca1eb570e8e4711...7e9b710922cae26f2bcaf92b858ba00bc6b5f040
No new Unresolved commits found.
No fake BIT_CHANGING commits found.
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Saving into BaselineCommit: 7e9b710922cae26f2bcaf92b858ba00bc6b5f040
=============================== Cleanup ===============================
Not removing any generated output.
RENAMING 7e9b710922cae26f2bcaf92b858ba00bc6b5f040 to latest_revision_validated_7e9b710922cae26f2bcaf92b858ba00bc6b5f040
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
Exiting with code: 0
