+ ulimit -s 8388608
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
CMake Warning:
Manually-specified variables were not used by the project:
NetCDF_C_INCLUDE_DIR
NetCDF_C_LIBRARY
NetCDF_Fortran_INCLUDE_DIR
NetCDF_Fortran_LIBRARY
Directory 1 is 34c6bb07afb6e445f60ea87dcc632969086f9fa1
Directory 2 is 2fe6e56761356da5b20a7fba14c72ec69fdc9d02
Using reporting threshold: 0.0
The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']
================================================ arm ================================================
>The linux diff detected differences in arm_stats.nc<
>>Differences above threshold were detected in the common fields in file arm_stats.nc<<
>>>Differences in common variables detected for case arm<<<
=====================================================================================================
================================================ cobra ================================================
>The linux diff detected differences in cobra_stats.nc<
>>Differences above threshold were detected in the common fields in file cobra_stats.nc<<
>>>Differences in common variables detected for case cobra<<<
=====================================================================================================
================================================ gabls3 ================================================
>The linux diff detected differences in gabls3_stats.nc<
>>Differences above threshold were detected in the common fields in file gabls3_stats.nc<<
>>>Differences in common variables detected for case gabls3<<<
=====================================================================================================
================================================ mpace_b ================================================
>The linux diff detected differences in mpace_b_stats.nc<
>>Differences above threshold were detected in the common fields in file mpace_b_stats.nc<<
>>>Differences in common variables detected for case mpace_b<<<
=====================================================================================================
================================================ rico_silhs ================================================
>The linux diff detected differences in rico_silhs_stats.nc<
>>Differences above threshold were detected in the common fields in file rico_silhs_stats.nc<<
>>>Differences in common variables detected for case rico_silhs<<<
=====================================================================================================
SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 0 cases []
Fail: 5 cases ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']
Directory 1 is 34c6bb07afb6e445f60ea87dcc632969086f9fa1
Directory 2 is 2fe6e56761356da5b20a7fba14c72ec69fdc9d02
Using reporting threshold: 0.0
The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']
================================================ arm ================================================
>The linux diff detected differences in arm_stats.nc<
>>Differences above threshold were detected in the common fields in file arm_stats.nc<<
>>>Differences in common variables detected for case arm<<<
=====================================================================================================
================================================ cobra ================================================
>The linux diff detected differences in cobra_stats.nc<
>>Differences above threshold were detected in the common fields in file cobra_stats.nc<<
>>>Differences in common variables detected for case cobra<<<
=====================================================================================================
================================================ gabls3 ================================================
>The linux diff detected differences in gabls3_stats.nc<
>>Differences above threshold were detected in the common fields in file gabls3_stats.nc<<
>>>Differences in common variables detected for case gabls3<<<
=====================================================================================================
================================================ mpace_b ================================================
>The linux diff detected differences in mpace_b_stats.nc<
>>Differences above threshold were detected in the common fields in file mpace_b_stats.nc<<
>>>Differences in common variables detected for case mpace_b<<<
=====================================================================================================
================================================ rico_silhs ================================================
>The linux diff detected differences in rico_silhs_stats.nc<
>>Differences above threshold were detected in the common fields in file rico_silhs_stats.nc<<
>>>Differences in common variables detected for case rico_silhs<<<
=====================================================================================================
SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 0 cases []
Fail: 5 cases ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: all
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3']
Diffing command: run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 34c6bb07afb6e445f60ea87dcc632969086f9fa1
Checking Commit: 34c6bb07afb6e445f60ea87dcc632969086f9fa1
Running: final commit to check, not labelled BIT_CHANGING
Checking out 34c6bb07afb6e445f60ea87dcc632969086f9fa1
Running: 'python compile.py -gpu openacc -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
Checking out 2fe6e56761356da5b20a7fba14c72ec69fdc9d02
Running: 'python compile.py -gpu openacc -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
Diffing: 'run_scripts/run_bindiff_all.py 34c6bb07afb6e445f60ea87dcc632969086f9fa1 2fe6e56761356da5b20a7fba14c72ec69fdc9d02'
ISSUE WITH COMMIT DETECTED: 34c6bb07afb6e445f60ea87dcc632969086f9fa1 differs from 2fe6e56761356da5b20a7fba14c72ec69fdc9d02
Finding all BIT_CHANGING commits in range: 2fe6e56761356da5b20a7fba14c72ec69fdc9d02...34c6bb07afb6e445f60ea87dcc632969086f9fa1
Output from 34c6bb07afb6e445f60ea87dcc632969086f9fa1 already saved
Output from 2fe6e56761356da5b20a7fba14c72ec69fdc9d02 already saved
Diffing: 'run_scripts/run_bindiff_all.py 34c6bb07afb6e445f60ea87dcc632969086f9fa1 2fe6e56761356da5b20a7fba14c72ec69fdc9d02'
Found:
34c6bb07afb6e445f60ea87dcc632969086f9fa1
=============================== Test Results ===============================
Commit Range Checked = 2fe6e56761356da5b20a7fba14c72ec69fdc9d02...34c6bb07afb6e445f60ea87dcc632969086f9fa1
New Unresolved Commits:
34c6bb07afb6e445f60ea87dcc632969086f9fa1
No fake BIT_CHANGING commits found.
Remaining Unresolved Commits (oldest commit is listed first):
34c6bb07afb6e445f60ea87dcc632969086f9fa1
=============================== Updating Config File ===============================
Saving into UnresolvedCommits: 34c6bb07afb6e445f60ea87dcc632969086f9fa1
Saving into BaselineCommit: 34c6bb07afb6e445f60ea87dcc632969086f9fa1
=============================== Cleanup ===============================
Not removing any generated output.
RENAMING 34c6bb07afb6e445f60ea87dcc632969086f9fa1 to latest_revision_validated_34c6bb07afb6e445f60ea87dcc632969086f9fa1
================== Unresolved Commit Status ==================
Remaining Unresolved Commits (oldest commit is listed first):
34c6bb07afb6e445f60ea87dcc632969086f9fa1
Exiting with code: 1
