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+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
CMake Warning:
  Manually-specified variables were not used by the project:

    NetCDF_C_INCLUDE_DIR
    NetCDF_C_LIBRARY
    NetCDF_Fortran_INCLUDE_DIR
    NetCDF_Fortran_LIBRARY


Directory 1 is f146255f50732c445ccbd012ca45888a9ce44d0b
Directory 2 is 2bac827cd3b91b3437ca62918583938237c9fd03
Using reporting threshold:  0.0 


The following cases will be compared: []

No comparable netCDF files were found in the provided directories.
Directory 1 is 643d128a5613019595aecd643f1028e937ad4b76
Directory 2 is 2bac827cd3b91b3437ca62918583938237c9fd03
Using reporting threshold:  0.0 


The following cases will be compared: []

No comparable netCDF files were found in the provided directories.
Directory 1 is f146255f50732c445ccbd012ca45888a9ce44d0b
Directory 2 is 643d128a5613019595aecd643f1028e937ad4b76
Using reporting threshold:  0.0 


The following cases will be compared: []

No comparable netCDF files were found in the provided directories.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test

Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git

Output Save Mode: all

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3']

Diffing command: run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 643d128a5613019595aecd643f1028e937ad4b76
Parsing message from commit: f146255f50732c445ccbd012ca45888a9ce44d0b

Checking Commit: 643d128a5613019595aecd643f1028e937ad4b76
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: f146255f50732c445ccbd012ca45888a9ce44d0b
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out f146255f50732c445ccbd012ca45888a9ce44d0b
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
	Checking out 2bac827cd3b91b3437ca62918583938237c9fd03
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
	Diffing: 'run_scripts/run_bindiff_all.py f146255f50732c445ccbd012ca45888a9ce44d0b 2bac827cd3b91b3437ca62918583938237c9fd03'
	ISSUE WITH COMMIT DETECTED: f146255f50732c445ccbd012ca45888a9ce44d0b differs from 2bac827cd3b91b3437ca62918583938237c9fd03

Finding all BIT_CHANGING commits in range: 2bac827cd3b91b3437ca62918583938237c9fd03...f146255f50732c445ccbd012ca45888a9ce44d0b
	Checking out 643d128a5613019595aecd643f1028e937ad4b76
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
	Output from 2bac827cd3b91b3437ca62918583938237c9fd03 already saved
	Diffing: 'run_scripts/run_bindiff_all.py 643d128a5613019595aecd643f1028e937ad4b76 2bac827cd3b91b3437ca62918583938237c9fd03'
	Output from f146255f50732c445ccbd012ca45888a9ce44d0b already saved
	Output from 643d128a5613019595aecd643f1028e937ad4b76 already saved
	Diffing: 'run_scripts/run_bindiff_all.py f146255f50732c445ccbd012ca45888a9ce44d0b 643d128a5613019595aecd643f1028e937ad4b76'
	Found:
		643d128a5613019595aecd643f1028e937ad4b76
		f146255f50732c445ccbd012ca45888a9ce44d0b

=============================== Test Results ===============================

Commit Range Checked = 2bac827cd3b91b3437ca62918583938237c9fd03...f146255f50732c445ccbd012ca45888a9ce44d0b

New Unresolved Commits:
	643d128a5613019595aecd643f1028e937ad4b76
	f146255f50732c445ccbd012ca45888a9ce44d0b

No fake BIT_CHANGING commits found.

Remaining Unresolved Commits (oldest commit is listed first):
	643d128a5613019595aecd643f1028e937ad4b76
	f146255f50732c445ccbd012ca45888a9ce44d0b

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 643d128a5613019595aecd643f1028e937ad4b76
f146255f50732c445ccbd012ca45888a9ce44d0b


Saving into BaselineCommit: f146255f50732c445ccbd012ca45888a9ce44d0b

=============================== Cleanup ===============================

Not removing any generated output.
	RENAMING f146255f50732c445ccbd012ca45888a9ce44d0b to latest_revision_validated_f146255f50732c445ccbd012ca45888a9ce44d0b

================== Unresolved Commit Status ==================

Remaining Unresolved Commits (oldest commit is listed first):
	643d128a5613019595aecd643f1028e937ad4b76
	f146255f50732c445ccbd012ca45888a9ce44d0b

Exiting with code: 1