Started by an SCM change
Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Still waiting to schedule task
Waiting for next available executor
Running on <a href='/jenkins/computer/mitch/' class='jenkins-table__link model-link model-link--float'>mitch</a> in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e (refs/remotes/origin/master)
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e # timeout=10
Commit message: "Autoupdated clubb's morrison using sam's morrison"
 &gt; git rev-list --no-walk b2e170923249df969fc5b3c0057edce4c1138e7d # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Update sys_admin Repo">[Pipeline] { (Update sys_admin Repo)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Python Test">[Pipeline] { (Run Python Test)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
Directory 1 is adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e
Directory 2 is b2e170923249df969fc5b3c0057edce4c1138e7d
Using reporting threshold:  0.0 


The following cases will be compared: ['arm', 'cobra', 'gabls3', 'mpace_b', 'rico_silhs']

###DIFFING arm netCDF (*.nc) files###
&gt;No differences detected by the linux diff in arm_stats.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case arm.&lt;&lt;&lt;
**********************************************************************************************************
###DIFFING cobra netCDF (*.nc) files###
&gt;No differences detected by the linux diff in cobra_stats.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case cobra.&lt;&lt;&lt;
**********************************************************************************************************
###DIFFING gabls3 netCDF (*.nc) files###
&gt;No differences detected by the linux diff in gabls3_stats.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case gabls3.&lt;&lt;&lt;
**********************************************************************************************************
###DIFFING mpace_b netCDF (*.nc) files###
&gt;No differences detected by the linux diff in mpace_b_stats.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case mpace_b.&lt;&lt;&lt;
**********************************************************************************************************
###DIFFING rico_silhs netCDF (*.nc) files###
&gt;No differences detected by the linux diff in rico_silhs_stats.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case rico_silhs.&lt;&lt;&lt;
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test

Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>

Output Save Mode: all

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -gpu openacc -debug', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b', '\npython run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3']

Diffing command: run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 9d56b4d0695c86980a6bfaaf9567449dbc4ccabd
Parsing message from commit: 1e25b23661f4235b8a0484bf76bc542cc1ab5f6d
Parsing message from commit: 14926dd026f178cacec4336a6389e3c59c2eb4d4
Parsing message from commit: 3b604aca0d98b5f656e2be332d3090819f8af59f
Parsing message from commit: feb80b9af098529dd9fb4192368a639bea44bac9
Parsing message from commit: 89a78e3c137f74f6b8ed0c02875651646e6b0fd8
Parsing message from commit: ea158fd73790b07ad91600595adf0a10f0bccd04
Parsing message from commit: 170ad3f0b10539e37efd2f19c76f51b6bec3a255
Parsing message from commit: 8759dedaf6cd411a4d4943c3d8525b022ca00986
Parsing message from commit: adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e

Checking Commit: 9d56b4d0695c86980a6bfaaf9567449dbc4ccabd
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 1e25b23661f4235b8a0484bf76bc542cc1ab5f6d
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 14926dd026f178cacec4336a6389e3c59c2eb4d4
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 3b604aca0d98b5f656e2be332d3090819f8af59f
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: feb80b9af098529dd9fb4192368a639bea44bac9
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 89a78e3c137f74f6b8ed0c02875651646e6b0fd8
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: ea158fd73790b07ad91600595adf0a10f0bccd04
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 170ad3f0b10539e37efd2f19c76f51b6bec3a255
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 8759dedaf6cd411a4d4943c3d8525b022ca00986
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
	Checking out b2e170923249df969fc5b3c0057edce4c1138e7d
	Running: 'python compile.py -gpu openacc -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in arm'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in rico_silhs'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in cobra'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in mpace_b'
	Running: 'python run_scripts/run_scm.py -params run_scripts/clubb_params_multi_col.in gabls3'
	Diffing: 'run_scripts/run_bindiff_all.py adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e b2e170923249df969fc5b3c0057edce4c1138e7d'

=============================== Test Results ===============================

Commit Range Checked = b2e170923249df969fc5b3c0057edce4c1138e7d...adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e

=============================== Cleanup ===============================

Not removing any generated output.
	RENAMING adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e to latest_revision_validated_adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="23" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="24" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="25" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="26" startId="2">[Pipeline] End of Pipeline
</span>Finished: SUCCESS