Started by user ha:////4PM3P9yyJudgDk1jkkaxxiynkv9mrkPsuMLy2ZODkh/3AAAAmR+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAz+EgZe/dLi1CL9jNLUpJzUIgDHv5uJwgAAAA==Gunther Huebler Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git ha:////4Cjittq30hkYZjMOAEpajcZR0V8yygtTgYIvukrI0KfJAAAAoh+LCAAAAAAAAP9tjTEOwjAQBM8BClpKHuFItIiK1krDC0x8GCfWnbEdkooX8TX+gCESFVvtrLSa5wtWKcKBo5UdUu8otU4GP9jS5Mixv3geZcdn2TIl9igbHBs2eJyx4YwwR1SwULBGaj0nRzbDRnX6rmuvydanHMu2V1A5c4MHCFXMWcf8hSnC9jqYxPTz/BXAFEIGsfuclm8zQVqFvQAAAA==[Pipeline] Start of Pipeline ha:////4OfoazyckbArggUo3ISfTGPxmxxRdP+stEFkv8dA98gsAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycohUghExsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jduZBmjwAAAAA==[Pipeline] node Running on ha:////4P4XGYfl7slFMUiRNJZtdx5ZzG2JwY5xJku6zLhWWlDCAAAAoR+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAz2EgZR/eT83ILSktQifY2k0sycEt3MPE19AHHxbH3KAAAAJenkins in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test ha:////4FDlcnFr9e5989JzoK959XjJGyMMLx4dByuovsdbc3KZAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0gA0xsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jfoP95RwAAAAA==[Pipeline] { ha:////4AE7Ft0kRt6yDHyl9I4e/bM1ttJPxUELiw6uNZ0QbR7MAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0gQkxsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jc09154wAAAAA==[Pipeline] stage ha:////4FkD70+B6a5J0827ONeUqfTiQDpR4+VE+gWaygTpm9OWAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0ggUxsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jek7ggRwAAAAA==[Pipeline] { (Declarative: Checkout SCM) ha:////4DWhhCSzqWCnqMgye1segLjeKHvm/Xy9xZ/t+WlCd57ZAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbaWGsbAmNJ0AWEZb8zwLrbuWJvJp3kLiJlZNMMm+a93rDOic4UbLcG+wdZu14DKOti0+U+lugiXu6ck2YKRguzSSpM+cFJRUDS1gDKwEbgzpQdmgLbIVXD9UGhba9lFS/o4DGdQM8gYlqLiqVL8wJdvexy4Q/z18BzLEA29ce4gfg7KmOvAAAAA==[Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 50a5528a55591d69e8b704dccebe1e7d6baa2669 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10 Commit message: "Small bug fix in fill_holes_parallel on GPU" > git rev-list --no-walk 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10 ha:////4M0lBXi8L0O4N1wFY5lRb5LBLalDgJBC9nNrfR5OtcBNAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbGRNjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI6xADvU7j9Dg2gqvAAAAA==[Pipeline] } ha:////4C9gVc/RMYuh4P3VFxhWoDv34M8ROVTApORMFM74AFZeAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQRbWRhjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI6xADvU7j9J+wGOvAAAAA==[Pipeline] // stage ha:////4OMUaFGtWHpXHrnJEqNuTaTTH7zYW1TXuR1OOwesYqpuAAAAph+LCAAAAAAAAP9tjTEOwjAQBM9BKWgpeYQDEh2iorXc8AITG+PEugv2haTiRXyNPxCIRMVWOyut5vmCMic4UPKycdgGzHWQXez91ORAqb1EGmRDZ1kTZopOajdosu44oyZ2MEcUsFCwdFhHygE9w0o15m6qaNBXJ07TtldQBHuDBwg1mdkk/sKYYH3tbSb8ef4KYOwYxI6h2G4+x/INtuQqUcEAAAA=[Pipeline] withEnv ha:////4POBlF/w66TdRjLOMaZmbKoF4qlP3EsxWZ8MwJufSwVuAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+DOrAycoiUzoiJNerCCUITQtLo/zZJSSdOxNW4Ay2VmPBg2Zas93pDGQOcKBjuNHYWY2t570czJ54pdDdPmTu68pYwkte80bkhpc9rbShpWFUw2AjYamw9RYsmwU44+ZCVl2iqSwrzdhTArBrgCYWYyUmG9C1TgP19VJHwx/kLgKlPwOrDYvXyLD8BobDcwgAAAA==[Pipeline] { ha:////4CZMEuZltkWrpbK+PirOYQRSCqpH7y+OE712fANE7n/gAAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUZUVMrFEWThCaEJJG/7dJSjpxIq7GHWipxIQHy7ZkvdcbqhjgRMEwp7GzGFvLej+aObFMobt5yszRlbWEkbxmQmdBSp/XKihpWFWUsOGw1dh6ihZNgh138iFrL9HUlxTm7cihtGqAJxR8JicZ0rdMAfb3UUXCH+cvAKY+Qdk0ix2WZ/UBbwyqm8IAAAA=[Pipeline] stage ha:////4KUMCWFfscl/TOIZTM5EUNA/xqZlP8Dml1BjSoC8QS+sAAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUwIiYukZZOEFoQkgb/V9+UtqJE3E17kBLJSY8WLYl673eUESGE7ETjcXWY6y96ELvpiQG4vYaaBANXURNGClYoeygyNhqqYqShUVZDisJa4t1oOjRJdjIRj90GTS68px42o4Scm/u8IRMTuSkOX3LyLC99SYS/jh/ATB2CfLdfrbD/Cw+y7kUycIAAAA=[Pipeline] { (Update sys_admin Repo) ha:////4ANXFJd3P2uH6oG6fHcMxklx/Urd1yvPwqSjWMs4SBztAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiBB2iSmu54QUmNsaJdWdsh6TiRXyNPxCIRMUWq51t5vmCZYpw5GixNdQ5So3D4Hs7LRw4dhfPA7Z8xoYpsTcozSBZm3pGydnAnKKEhYCVocZzcmQzrEWr7qryimx1ynH6DgJKp2/wgEJM5qxi/sIYYXPtdWL6ef4KYAwZyu3uU/vwBgq0rvS+AAAA[Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. ha:////4HhaSfPPAiGCqYCWgOSOnTKEXCDVzERShhXph91HbicNAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIihKgQVVrLDS8wsTFOrDtjOyQVL+Jr/IFAJCq2WO1sM88XLFOEI0eLraHOUWocBt/baeHAsbt4HrDlMzZMib1BaQbJ2tQzSs4G5hQlLASsDDWekyObYS1adVeVV2SrU47TdxBQOn2DBxRiMmcV8xfGCJtrrxPTz/NXAGMIGcrt/lO7N7BnLt++AAAA[Pipeline] } ha:////4FVL20V4kFZmoupJ3yD+ARu1qGTPdJik5rudocilzqMlAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiKGgQVVrLDS8wsTFOrDtjOyQVL+Jr/IFAJCq2WO1sM88XLFOEI0eLraHOUWocBt/baeHAsbt4HrDlMzZMib1BaQbJ2tQzSs4G5hQlLASsDDWekyObYS1adVeVV2SrU47TdxBQOn2DBxRiMmcV8xfGCJtrrxPTz/NXAGMIGcrt/lO7N4glvS6+AAAA[Pipeline] // stage ha:////4GMEqHjUfYXAoMs0hqFp6DevraMZMFu0DPhP4N7yQmvYAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUnRgQE2uUhROEJoSk0f9tkpJOnIircQdaKjHhwbItWe/1hioGOFEwzGnsLMbWst6PZk4sU+hunjJzdGUtYSSvmdBZkNLntQpKGlYVJWw4bDW2nqJFk2DHnXzI2ks09SWFeTtyKK0a4AkFn8lJhvQtU4D9fVSR8Mf5C4CpT1A2zWKH5Vl9ANydZ8vCAAAA[Pipeline] stage ha:////4JQl56uZsMv+8JjlsYRZ9i8KX7vcTdAxCqZjHZrE7A7YAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUTCAhpq5RFk4QmhDSRv+Xn5R24kRcjTvQUokJD5ZtyXqvNxSR4UTsRGOx9RhrL7rQuymJgbi9BhpEQxdRE0YKVig7KDK2WqqiZGFRlsNKwtpiHSh6dAk2stEPXQaNrjwnnrajhNybOzwhkxM5aU7fMjJsb72JhD/OXwCMXYJ8t5/tMD+LD0rlhNLCAAAA[Pipeline] { (Run Python Test) ha:////4CK4bwxOvxmA4DE5Mgve/HabCo+37fityp5hdwwJL6T6AAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiOhCiSmu54QUmNsaJdWdsh6TiRXyNPxCIRMUWq51t5vmCZYpw5GixNdQ5So3D4Hs7LRw4dhfPA7Z8xoYpsTcozSBZm3pGydnAnKKEhYCVocZzcmQzrEWr7qryimx1ynH6DgJKp2/wgEJM5qxi/sIYYXPtdWL6ef4KYAwZyu3uU/vwBr2eB0O+AAAA[Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config Directory 1 is 50a5528a55591d69e8b704dccebe1e7d6baa2669 Directory 2 is ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara'] ###DIFFING arm netCDF (*.nc) files### >The linux diff detected differences in arm_zm.nc< >>No differences detected in the common fields in file arm_zm.nc<< >The linux diff detected differences in arm_zt.nc< >>No differences detected in the common fields in file arm_zt.nc<< >The linux diff detected differences in arm_sfc.nc< >>No differences detected in the common fields in file arm_sfc.nc<< >No differences detected by the linux diff in arm_multi_col_zm.nc< >No differences detected by the linux diff in arm_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case arm.<<< ********************************************************************************************************** ###DIFFING arm_97 netCDF (*.nc) files### >The linux diff detected differences in arm_97_zm.nc< >>No differences detected in the common fields in file arm_97_zm.nc<< >The linux diff detected differences in arm_97_zt.nc< >>No differences detected in the common fields in file arm_97_zt.nc<< >The linux diff detected differences in arm_97_sfc.nc< >>No differences detected in the common fields in file arm_97_sfc.nc<< >No differences detected by the linux diff in arm_97_multi_col_zm.nc< >No differences detected by the linux diff in arm_97_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case arm_97.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >The linux diff detected differences in atex_zm.nc< >>No differences detected in the common fields in file atex_zm.nc<< >The linux diff detected differences in atex_zt.nc< >>No differences detected in the common fields in file atex_zt.nc<< >The linux diff detected differences in atex_sfc.nc< >>No differences detected in the common fields in file atex_sfc.nc<< >No differences detected by the linux diff in atex_multi_col_zm.nc< >No differences detected by the linux diff in atex_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >The linux diff detected differences in bomex_zm.nc< >>No differences detected in the common fields in file bomex_zm.nc<< >The linux diff detected differences in bomex_zt.nc< >>No differences detected in the common fields in file bomex_zt.nc<< >The linux diff detected differences in bomex_sfc.nc< >>No differences detected in the common fields in file bomex_sfc.nc<< >No differences detected by the linux diff in bomex_multi_col_zm.nc< >No differences detected by the linux diff in bomex_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf01_zm.nc< >>No differences detected in the common fields in file dycoms2_rf01_zm.nc<< >The linux diff detected differences in dycoms2_rf01_zt.nc< >>No differences detected in the common fields in file dycoms2_rf01_zt.nc<< >The linux diff detected differences in dycoms2_rf01_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf01_sfc.nc<< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf02_ds_zm.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zm.nc<< >The linux diff detected differences in dycoms2_rf02_ds_zt.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zt.nc<< >The linux diff detected differences in dycoms2_rf02_ds_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_sfc.nc<< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING gabls3_night netCDF (*.nc) files### >The linux diff detected differences in gabls3_night_zm.nc< >>No differences detected in the common fields in file gabls3_night_zm.nc<< >The linux diff detected differences in gabls3_night_zt.nc< >>No differences detected in the common fields in file gabls3_night_zt.nc<< >The linux diff detected differences in gabls3_night_sfc.nc< >>No differences detected in the common fields in file gabls3_night_sfc.nc<< >No differences detected by the linux diff in gabls3_night_multi_col_zm.nc< >No differences detected by the linux diff in gabls3_night_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case gabls3_night.<<< ********************************************************************************************************** ###DIFFING lba netCDF (*.nc) files### >The linux diff detected differences in lba_zm.nc< Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 447, in main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 88, in main linux_diff, diff_in_files, file_skipped = find_diffs_in_all_files(args.dirs[0], args.dirs[1], args.fileout, args.verbose, tot_abs_diff_thresh, args.ghostbuster) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 248, in find_diffs_in_all_files diff_in_case, new_content = find_diffs_in_common_vars(ncfname, dir1, dir2, save_to_file, verbose, thresh, l_ghostbuster) or diff_in_case File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 415, in find_diffs_in_common_vars np.max(abs_diff), File "/usr/local/lib/python3.10/dist-packages/numpy/core/fromnumeric.py", line 2810, in max return _wrapreduction(a, np.maximum, 'max', axis, None, out, File "/usr/local/lib/python3.10/dist-packages/numpy/core/fromnumeric.py", line 86, in _wrapreduction return reduction(axis=axis, out=out, **passkwargs) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 5939, in max result = self.filled(fill_value).max( File "/usr/local/lib/python3.10/dist-packages/numpy/core/_methods.py", line 41, in _amax return umr_maximum(a, axis, None, out, keepdims, initial, where) ValueError: zero-size array to reduction operation maximum which has no identity Directory 1 is 665f3896481654acdb49de9afae25d7a9b24a81c Directory 2 is ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara'] ###DIFFING arm netCDF (*.nc) files### >The linux diff detected differences in arm_zm.nc< >>No differences detected in the common fields in file arm_zm.nc<< >The linux diff detected differences in arm_zt.nc< >>No differences detected in the common fields in file arm_zt.nc<< >The linux diff detected differences in arm_sfc.nc< >>No differences detected in the common fields in file arm_sfc.nc<< >No differences detected by the linux diff in arm_multi_col_zm.nc< >No differences detected by the linux diff in arm_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case arm.<<< ********************************************************************************************************** ###DIFFING arm_97 netCDF (*.nc) files### >The linux diff detected differences in arm_97_zm.nc< >>No differences detected in the common fields in file arm_97_zm.nc<< >The linux diff detected differences in arm_97_zt.nc< >>No differences detected in the common fields in file arm_97_zt.nc<< >The linux diff detected differences in arm_97_sfc.nc< >>No differences detected in the common fields in file arm_97_sfc.nc<< >No differences detected by the linux diff in arm_97_multi_col_zm.nc< >No differences detected by the linux diff in arm_97_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case arm_97.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >The linux diff detected differences in atex_zm.nc< >>No differences detected in the common fields in file atex_zm.nc<< >The linux diff detected differences in atex_zt.nc< >>No differences detected in the common fields in file atex_zt.nc<< >The linux diff detected differences in atex_sfc.nc< >>No differences detected in the common fields in file atex_sfc.nc<< >No differences detected by the linux diff in atex_multi_col_zm.nc< >No differences detected by the linux diff in atex_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >The linux diff detected differences in bomex_zm.nc< >>No differences detected in the common fields in file bomex_zm.nc<< >The linux diff detected differences in bomex_zt.nc< >>No differences detected in the common fields in file bomex_zt.nc<< >The linux diff detected differences in bomex_sfc.nc< >>No differences detected in the common fields in file bomex_sfc.nc<< >No differences detected by the linux diff in bomex_multi_col_zm.nc< >No differences detected by the linux diff in bomex_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf01_zm.nc< >>No differences detected in the common fields in file dycoms2_rf01_zm.nc<< >The linux diff detected differences in dycoms2_rf01_zt.nc< >>No differences detected in the common fields in file dycoms2_rf01_zt.nc<< >The linux diff detected differences in dycoms2_rf01_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf01_sfc.nc<< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf02_ds_zm.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zm.nc<< >The linux diff detected differences in dycoms2_rf02_ds_zt.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zt.nc<< >The linux diff detected differences in dycoms2_rf02_ds_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_sfc.nc<< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING gabls3_night netCDF (*.nc) files### >The linux diff detected differences in gabls3_night_zm.nc< >>No differences detected in the common fields in file gabls3_night_zm.nc<< >The linux diff detected differences in gabls3_night_zt.nc< >>No differences detected in the common fields in file gabls3_night_zt.nc<< >The linux diff detected differences in gabls3_night_sfc.nc< >>No differences detected in the common fields in file gabls3_night_sfc.nc<< >No differences detected by the linux diff in gabls3_night_multi_col_zm.nc< >No differences detected by the linux diff in gabls3_night_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case gabls3_night.<<< ********************************************************************************************************** ###DIFFING lba netCDF (*.nc) files### >The linux diff detected differences in lba_zm.nc< Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 447, in main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 88, in main linux_diff, diff_in_files, file_skipped = find_diffs_in_all_files(args.dirs[0], args.dirs[1], args.fileout, args.verbose, tot_abs_diff_thresh, args.ghostbuster) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 248, in find_diffs_in_all_files diff_in_case, new_content = find_diffs_in_common_vars(ncfname, dir1, dir2, save_to_file, verbose, thresh, l_ghostbuster) or diff_in_case File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 415, in find_diffs_in_common_vars np.max(abs_diff), File "/usr/local/lib/python3.10/dist-packages/numpy/core/fromnumeric.py", line 2810, in max return _wrapreduction(a, np.maximum, 'max', axis, None, out, File "/usr/local/lib/python3.10/dist-packages/numpy/core/fromnumeric.py", line 86, in _wrapreduction return reduction(axis=axis, out=out, **passkwargs) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 5939, in max result = self.filled(fill_value).max( File "/usr/local/lib/python3.10/dist-packages/numpy/core/_methods.py", line 41, in _amax return umr_maximum(a, axis, None, out, keepdims, initial, where) ValueError: zero-size array to reduction operation maximum which has no identity Sending interrupt signal to process Aborted by ha:////4PM3P9yyJudgDk1jkkaxxiynkv9mrkPsuMLy2ZODkh/3AAAAmR+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAz+EgZe/dLi1CL9jNLUpJzUIgDHv5uJwgAAAA==Gunther Huebler Terminated Directory 1 is f3de007e9528afc6cc2d71090bce5c6c53337152 Directory 2 is 665f3896481654acdb49de9afae25d7a9b24a81c Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'rico'] ###DIFFING arm netCDF (*.nc) files### >No differences detected by the linux diff in arm_zm.nc< >No differences detected by the linux diff in arm_zt.nc< >No differences detected by the linux diff in arm_sfc.nc< >No differences detected by the linux diff in arm_multi_col_zm.nc< >No differences detected by the linux diff in arm_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case arm.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >No differences detected by the linux diff in atex_zm.nc< >No differences detected by the linux diff in atex_zt.nc< >No differences detected by the linux diff in atex_sfc.nc< >No differences detected by the linux diff in atex_multi_col_zm.nc< >No differences detected by the linux diff in atex_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >No differences detected by the linux diff in bomex_zm.nc< >No differences detected by the linux diff in bomex_zt.nc< >No differences detected by the linux diff in bomex_sfc.nc< >No differences detected by the linux diff in bomex_multi_col_zm.nc< >No differences detected by the linux diff in bomex_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf01_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_zt.nc< >No differences detected by the linux diff in dycoms2_rf01_sfc.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf02_ds_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_zt.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_sfc.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING rico netCDF (*.nc) files### >The linux diff detected differences in rico_zm.nc< Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 447, in main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 88, in main linux_diff, diff_in_files, file_skipped = find_diffs_in_all_files(args.dirs[0], args.dirs[1], args.fileout, args.verbose, tot_abs_diff_thresh, args.ghostbuster) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 248, in find_diffs_in_all_files diff_in_case, new_content = find_diffs_in_common_vars(ncfname, dir1, dir2, save_to_file, verbose, thresh, l_ghostbuster) or diff_in_case File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 380, in find_diffs_in_common_vars abs_diff = abs( dset1[var][:,:,:,:] - dset2[var][:,:,:,:] ) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 4235, in __sub__ return subtract(self, other) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 1020, in __call__ result = self.f(da, db, *args, **kwargs) ValueError: operands could not be broadcast together with shapes (0,58,1,1) (864,58,1,1) Terminated Directory 1 is 50a5528a55591d69e8b704dccebe1e7d6baa2669 Directory 2 is f3de007e9528afc6cc2d71090bce5c6c53337152 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'rico'] ###DIFFING arm netCDF (*.nc) files### >No differences detected by the linux diff in arm_zm.nc< >No differences detected by the linux diff in arm_zt.nc< >No differences detected by the linux diff in arm_sfc.nc< >No differences detected by the linux diff in arm_multi_col_zm.nc< >No differences detected by the linux diff in arm_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case arm.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >No differences detected by the linux diff in atex_zm.nc< >No differences detected by the linux diff in atex_zt.nc< >No differences detected by the linux diff in atex_sfc.nc< >No differences detected by the linux diff in atex_multi_col_zm.nc< >No differences detected by the linux diff in atex_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >No differences detected by the linux diff in bomex_zm.nc< >No differences detected by the linux diff in bomex_zt.nc< >No differences detected by the linux diff in bomex_sfc.nc< >No differences detected by the linux diff in bomex_multi_col_zm.nc< >No differences detected by the linux diff in bomex_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf01_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_zt.nc< >No differences detected by the linux diff in dycoms2_rf01_sfc.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf02_ds_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_zt.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_sfc.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING rico netCDF (*.nc) files### >The linux diff detected differences in rico_zm.nc< Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 447, in main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 88, in main linux_diff, diff_in_files, file_skipped = find_diffs_in_all_files(args.dirs[0], args.dirs[1], args.fileout, args.verbose, tot_abs_diff_thresh, args.ghostbuster) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 248, in find_diffs_in_all_files diff_in_case, new_content = find_diffs_in_common_vars(ncfname, dir1, dir2, save_to_file, verbose, thresh, l_ghostbuster) or diff_in_case File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 380, in find_diffs_in_common_vars abs_diff = abs( dset1[var][:,:,:,:] - dset2[var][:,:,:,:] ) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 4235, in __sub__ return subtract(self, other) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 1020, in __call__ result = self.f(da, db, *args, **kwargs) ValueError: operands could not be broadcast together with shapes (864,58,1,1) (0,58,1,1) script returned exit code 143 ha:////4PBxYFW1qansOBRF8vjWk2A2+fKCYjrl9XqTZ8JM7D6+AAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOICVEgoFa3lhheYxBgn1l2wHZyKF/E1/oBFJCq2WO1sM683LIOHmr3BTlNvKTQWBzeavDCx76+OE3Z8wYYpsNModZLc6tOMkqOGOUUJCwErTY3jYMlEWItOPVTlFJnqHH3+jgJK297hCYXI5qh8/MLkYXMb28D08/wVwDQMEcr9Ntfu8AEWNdkpvgAAAA==[Pipeline] } ha:////4FTjaDN1tsiKbmkwo+u5WB7iWrd+XE+6/XnQiFvhcctHAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOKi0FAgqrRWGl5gYmOcWHfGdkgqXsTX+AMWkajYYrWzzbzesI4BThwM9poGS7Gz6N1o8sKJw3B1PGHPF+yYIjuNrZ5aVrpZsOWkYUlRwkrARlPnOFoyCbailw9ZOUmmOqeQv6OA0qo7PKEQ2ZxkSF+YA+xuo4pMP89fAczeJyj3da768AEi+zpyvgAAAA==[Pipeline] // stage ha:////4I/iKv7CmVvbBuwaBkJ522wVKMvAxCVU4CTw79jPYOAQAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPMJR0iIqWisNLzCxMU6sO8e+kFS8iK/xBywiUbHFamebeb1hmyKcKFrRGxwcps6J4Cebl5gpDjdPs+jpKjrCRN6I1swtaXNesSU2sKYoYSNhZ7DzlBxahr3s1UNVXqGtLhzzd5RQOj3CEwqZzawif2GJcLhPOhH+PH8FsITAUDZNrrr+ALkszR2+AAAA[Pipeline] } ha:////4BMQrUXAlRoMDloQwb6I/Wcx3UB42CmJNwrxP1TeUijiAAAApB+LCAAAAAAAAP9tjTsOwjAQRDdBFLSUHGLDp0SpaC03nMAkxjixdoPt4FSciKtxBywiUTHFaN407/WGZfBQszfYaeothcbi4EaTFyb2/dVxwo4v2DAFdhqlTpJbfZpRctQwpyhhIWClqXEcLJkIa9Gph6qcIlOdo8/fUUBp2zs8oRDZHJWPX5g8bG5jG5h+nr8CmIYhQrk/5NptP4rPlqG+AAAA[Pipeline] // withEnv ha:////4C8WMLUT8piEoeSyb1Do3eviWH3g3Ez1fs/pdsFk+oMNAAAAox+LCAAAAAAAAP9tjbEOgjAURS8YB1dHP6Ikhs04uTYsfkGFWgvNe9g+hMkv8tf8B4kkTt7pnrOc1xvrFHHk6FRrqfOUaq/6MLj5qZFjdw08qpYvqmZKHKyq7FhxY08LViwWy7IcK42NpTpw8uQEW92ahymCIVecJc7uoJH75o4nMj2XxUT5whSxuw1NYvp1/gYw9b0g35eCrPwA6/9Rob0AAAA=[Pipeline] } ha:////4AQT/ujib4mxmGKK6dvAAgeVppX/OLXITxcGKkpL2pAZAAAAox+LCAAAAAAAAP9tjTEOwjAQBDdBFLSUPMKRQFSIitZKwwtMYowT6y7YF5KKF/E1/kBEJCq22plmXm8sU8SRo1ONpdZTqrzqQu+mpwaO7TXwoBq+qIopcbCqtEPJtT3NWLJYzMtyLDRWlqrAyZMTrHVjHqYIhlxxlji5g0bu6zueyPRUFhPlC2PE5tbXienX+RvA2HWCfLsXZLsP+ENVAr0AAAA=[Pipeline] // node ha:////4HGUtTqq1Q65sg1o6CT0QBmCkK32Wp/OksVCcLr914TbAAAAox+LCAAAAAAAAP9tjbEOgjAURS8YB1dHP6IkDC7GybVh8Qsq1Fpo3sP2IUx+kb/mP0gkcfJO95zlvN5Yp4gjR6daS52nVHvVh8HNT40cu2vgUbV8UTVT4mBVZceKG3tasGKxWJblWGlsLNWBkycn2OrWPEwRDLniLHF2B43cN3c8kem5LCbKF6aI3W1oEtOv8zeAqe8FebkXZOUHvgnyMr0AAAA=[Pipeline] End of Pipeline org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: bce64096-6e87-4a97-be8b-1af1aa65a32a Finished: ABORTED