Started by user Gunther Huebler Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 50a5528a55591d69e8b704dccebe1e7d6baa2669 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10 Commit message: "Small bug fix in fill_holes_parallel on GPU" > git rev-list --no-walk 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config Directory 1 is 50a5528a55591d69e8b704dccebe1e7d6baa2669 Directory 2 is ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara'] ###DIFFING arm netCDF (*.nc) files### >The linux diff detected differences in arm_zm.nc< >>No differences detected in the common fields in file arm_zm.nc<< >The linux diff detected differences in arm_zt.nc< >>No differences detected in the common fields in file arm_zt.nc<< >The linux diff detected differences in arm_sfc.nc< >>No differences detected in the common fields in file arm_sfc.nc<< >No differences detected by the linux diff in arm_multi_col_zm.nc< >No differences detected by the linux diff in arm_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case arm.<<< ********************************************************************************************************** ###DIFFING arm_97 netCDF (*.nc) files### >The linux diff detected differences in arm_97_zm.nc< >>No differences detected in the common fields in file arm_97_zm.nc<< >The linux diff detected differences in arm_97_zt.nc< >>No differences detected in the common fields in file arm_97_zt.nc<< >The linux diff detected differences in arm_97_sfc.nc< >>No differences detected in the common fields in file arm_97_sfc.nc<< >No differences detected by the linux diff in arm_97_multi_col_zm.nc< >No differences detected by the linux diff in arm_97_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case arm_97.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >The linux diff detected differences in atex_zm.nc< >>No differences detected in the common fields in file atex_zm.nc<< >The linux diff detected differences in atex_zt.nc< >>No differences detected in the common fields in file atex_zt.nc<< >The linux diff detected differences in atex_sfc.nc< >>No differences detected in the common fields in file atex_sfc.nc<< >No differences detected by the linux diff in atex_multi_col_zm.nc< >No differences detected by the linux diff in atex_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >The linux diff detected differences in bomex_zm.nc< >>No differences detected in the common fields in file bomex_zm.nc<< >The linux diff detected differences in bomex_zt.nc< >>No differences detected in the common fields in file bomex_zt.nc<< >The linux diff detected differences in bomex_sfc.nc< >>No differences detected in the common fields in file bomex_sfc.nc<< >No differences detected by the linux diff in bomex_multi_col_zm.nc< >No differences detected by the linux diff in bomex_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf01_zm.nc< >>No differences detected in the common fields in file dycoms2_rf01_zm.nc<< >The linux diff detected differences in dycoms2_rf01_zt.nc< >>No differences detected in the common fields in file dycoms2_rf01_zt.nc<< >The linux diff detected differences in dycoms2_rf01_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf01_sfc.nc<< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf02_ds_zm.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zm.nc<< >The linux diff detected differences in dycoms2_rf02_ds_zt.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zt.nc<< >The linux diff detected differences in dycoms2_rf02_ds_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_sfc.nc<< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING gabls3_night netCDF (*.nc) files### >The linux diff detected differences in gabls3_night_zm.nc< >>No differences detected in the common fields in file gabls3_night_zm.nc<< >The linux diff detected differences in gabls3_night_zt.nc< >>No differences detected in the common fields in file gabls3_night_zt.nc<< >The linux diff detected differences in gabls3_night_sfc.nc< >>No differences detected in the common fields in file gabls3_night_sfc.nc<< >No differences detected by the linux diff in gabls3_night_multi_col_zm.nc< >No differences detected by the linux diff in gabls3_night_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case gabls3_night.<<< ********************************************************************************************************** ###DIFFING lba netCDF (*.nc) files### >The linux diff detected differences in lba_zm.nc< Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 447, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 88, in main linux_diff, diff_in_files, file_skipped = find_diffs_in_all_files(args.dirs[0], args.dirs[1], args.fileout, args.verbose, tot_abs_diff_thresh, args.ghostbuster) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 248, in find_diffs_in_all_files diff_in_case, new_content = find_diffs_in_common_vars(ncfname, dir1, dir2, save_to_file, verbose, thresh, l_ghostbuster) or diff_in_case File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 415, in find_diffs_in_common_vars np.max(abs_diff), File "/usr/local/lib/python3.10/dist-packages/numpy/core/fromnumeric.py", line 2810, in max return _wrapreduction(a, np.maximum, 'max', axis, None, out, File "/usr/local/lib/python3.10/dist-packages/numpy/core/fromnumeric.py", line 86, in _wrapreduction return reduction(axis=axis, out=out, **passkwargs) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 5939, in max result = self.filled(fill_value).max( File "/usr/local/lib/python3.10/dist-packages/numpy/core/_methods.py", line 41, in _amax return umr_maximum(a, axis, None, out, keepdims, initial, where) ValueError: zero-size array to reduction operation maximum which has no identity Directory 1 is 665f3896481654acdb49de9afae25d7a9b24a81c Directory 2 is ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara'] ###DIFFING arm netCDF (*.nc) files### >The linux diff detected differences in arm_zm.nc< >>No differences detected in the common fields in file arm_zm.nc<< >The linux diff detected differences in arm_zt.nc< >>No differences detected in the common fields in file arm_zt.nc<< >The linux diff detected differences in arm_sfc.nc< >>No differences detected in the common fields in file arm_sfc.nc<< >No differences detected by the linux diff in arm_multi_col_zm.nc< >No differences detected by the linux diff in arm_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case arm.<<< ********************************************************************************************************** ###DIFFING arm_97 netCDF (*.nc) files### >The linux diff detected differences in arm_97_zm.nc< >>No differences detected in the common fields in file arm_97_zm.nc<< >The linux diff detected differences in arm_97_zt.nc< >>No differences detected in the common fields in file arm_97_zt.nc<< >The linux diff detected differences in arm_97_sfc.nc< >>No differences detected in the common fields in file arm_97_sfc.nc<< >No differences detected by the linux diff in arm_97_multi_col_zm.nc< >No differences detected by the linux diff in arm_97_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case arm_97.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >The linux diff detected differences in atex_zm.nc< >>No differences detected in the common fields in file atex_zm.nc<< >The linux diff detected differences in atex_zt.nc< >>No differences detected in the common fields in file atex_zt.nc<< >The linux diff detected differences in atex_sfc.nc< >>No differences detected in the common fields in file atex_sfc.nc<< >No differences detected by the linux diff in atex_multi_col_zm.nc< >No differences detected by the linux diff in atex_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >The linux diff detected differences in bomex_zm.nc< >>No differences detected in the common fields in file bomex_zm.nc<< >The linux diff detected differences in bomex_zt.nc< >>No differences detected in the common fields in file bomex_zt.nc<< >The linux diff detected differences in bomex_sfc.nc< >>No differences detected in the common fields in file bomex_sfc.nc<< >No differences detected by the linux diff in bomex_multi_col_zm.nc< >No differences detected by the linux diff in bomex_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf01_zm.nc< >>No differences detected in the common fields in file dycoms2_rf01_zm.nc<< >The linux diff detected differences in dycoms2_rf01_zt.nc< >>No differences detected in the common fields in file dycoms2_rf01_zt.nc<< >The linux diff detected differences in dycoms2_rf01_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf01_sfc.nc<< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >The linux diff detected differences in dycoms2_rf02_ds_zm.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zm.nc<< >The linux diff detected differences in dycoms2_rf02_ds_zt.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_zt.nc<< >The linux diff detected differences in dycoms2_rf02_ds_sfc.nc< >>No differences detected in the common fields in file dycoms2_rf02_ds_sfc.nc<< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING gabls3_night netCDF (*.nc) files### >The linux diff detected differences in gabls3_night_zm.nc< >>No differences detected in the common fields in file gabls3_night_zm.nc<< >The linux diff detected differences in gabls3_night_zt.nc< >>No differences detected in the common fields in file gabls3_night_zt.nc<< >The linux diff detected differences in gabls3_night_sfc.nc< >>No differences detected in the common fields in file gabls3_night_sfc.nc<< >No differences detected by the linux diff in gabls3_night_multi_col_zm.nc< >No differences detected by the linux diff in gabls3_night_multi_col_zt.nc< >>>Differences in linux diff but no differences in common variables detected for case gabls3_night.<<< ********************************************************************************************************** ###DIFFING lba netCDF (*.nc) files### >The linux diff detected differences in lba_zm.nc< Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 447, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 88, in main linux_diff, diff_in_files, file_skipped = find_diffs_in_all_files(args.dirs[0], args.dirs[1], args.fileout, args.verbose, tot_abs_diff_thresh, args.ghostbuster) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 248, in find_diffs_in_all_files diff_in_case, new_content = find_diffs_in_common_vars(ncfname, dir1, dir2, save_to_file, verbose, thresh, l_ghostbuster) or diff_in_case File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 415, in find_diffs_in_common_vars np.max(abs_diff), File "/usr/local/lib/python3.10/dist-packages/numpy/core/fromnumeric.py", line 2810, in max return _wrapreduction(a, np.maximum, 'max', axis, None, out, File "/usr/local/lib/python3.10/dist-packages/numpy/core/fromnumeric.py", line 86, in _wrapreduction return reduction(axis=axis, out=out, **passkwargs) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 5939, in max result = self.filled(fill_value).max( File "/usr/local/lib/python3.10/dist-packages/numpy/core/_methods.py", line 41, in _amax return umr_maximum(a, axis, None, out, keepdims, initial, where) ValueError: zero-size array to reduction operation maximum which has no identity Sending interrupt signal to process Aborted by Gunther Huebler Terminated Directory 1 is f3de007e9528afc6cc2d71090bce5c6c53337152 Directory 2 is 665f3896481654acdb49de9afae25d7a9b24a81c Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'rico'] ###DIFFING arm netCDF (*.nc) files### >No differences detected by the linux diff in arm_zm.nc< >No differences detected by the linux diff in arm_zt.nc< >No differences detected by the linux diff in arm_sfc.nc< >No differences detected by the linux diff in arm_multi_col_zm.nc< >No differences detected by the linux diff in arm_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case arm.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >No differences detected by the linux diff in atex_zm.nc< >No differences detected by the linux diff in atex_zt.nc< >No differences detected by the linux diff in atex_sfc.nc< >No differences detected by the linux diff in atex_multi_col_zm.nc< >No differences detected by the linux diff in atex_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >No differences detected by the linux diff in bomex_zm.nc< >No differences detected by the linux diff in bomex_zt.nc< >No differences detected by the linux diff in bomex_sfc.nc< >No differences detected by the linux diff in bomex_multi_col_zm.nc< >No differences detected by the linux diff in bomex_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf01_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_zt.nc< >No differences detected by the linux diff in dycoms2_rf01_sfc.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf02_ds_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_zt.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_sfc.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING rico netCDF (*.nc) files### >The linux diff detected differences in rico_zm.nc< Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 447, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 88, in main linux_diff, diff_in_files, file_skipped = find_diffs_in_all_files(args.dirs[0], args.dirs[1], args.fileout, args.verbose, tot_abs_diff_thresh, args.ghostbuster) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 248, in find_diffs_in_all_files diff_in_case, new_content = find_diffs_in_common_vars(ncfname, dir1, dir2, save_to_file, verbose, thresh, l_ghostbuster) or diff_in_case File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 380, in find_diffs_in_common_vars abs_diff = abs( dset1[var][:,:,:,:] - dset2[var][:,:,:,:] ) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 4235, in __sub__ return subtract(self, other) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 1020, in __call__ result = self.f(da, db, *args, **kwargs) ValueError: operands could not be broadcast together with shapes (0,58,1,1) (864,58,1,1) Terminated Directory 1 is 50a5528a55591d69e8b704dccebe1e7d6baa2669 Directory 2 is f3de007e9528afc6cc2d71090bce5c6c53337152 Using reporting threshold: 0.0 The following cases will be compared: ['arm', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'rico'] ###DIFFING arm netCDF (*.nc) files### >No differences detected by the linux diff in arm_zm.nc< >No differences detected by the linux diff in arm_zt.nc< >No differences detected by the linux diff in arm_sfc.nc< >No differences detected by the linux diff in arm_multi_col_zm.nc< >No differences detected by the linux diff in arm_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case arm.<<< ********************************************************************************************************** ###DIFFING atex netCDF (*.nc) files### >No differences detected by the linux diff in atex_zm.nc< >No differences detected by the linux diff in atex_zt.nc< >No differences detected by the linux diff in atex_sfc.nc< >No differences detected by the linux diff in atex_multi_col_zm.nc< >No differences detected by the linux diff in atex_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case atex.<<< ********************************************************************************************************** ###DIFFING bomex netCDF (*.nc) files### >No differences detected by the linux diff in bomex_zm.nc< >No differences detected by the linux diff in bomex_zt.nc< >No differences detected by the linux diff in bomex_sfc.nc< >No differences detected by the linux diff in bomex_multi_col_zm.nc< >No differences detected by the linux diff in bomex_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf01 netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf01_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_zt.nc< >No differences detected by the linux diff in dycoms2_rf01_sfc.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf01_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ********************************************************************************************************** ###DIFFING dycoms2_rf02_ds netCDF (*.nc) files### >No differences detected by the linux diff in dycoms2_rf02_ds_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_zt.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_sfc.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zm.nc< >No differences detected by the linux diff in dycoms2_rf02_ds_multi_col_zt.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<< ********************************************************************************************************** ###DIFFING rico netCDF (*.nc) files### >The linux diff detected differences in rico_zm.nc< Traceback (most recent call last): File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 447, in <module> main() File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 88, in main linux_diff, diff_in_files, file_skipped = find_diffs_in_all_files(args.dirs[0], args.dirs[1], args.fileout, args.verbose, tot_abs_diff_thresh, args.ghostbuster) File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 248, in find_diffs_in_all_files diff_in_case, new_content = find_diffs_in_common_vars(ncfname, dir1, dir2, save_to_file, verbose, thresh, l_ghostbuster) or diff_in_case File "/home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test/run_scripts/run_bindiff_all.py", line 380, in find_diffs_in_common_vars abs_diff = abs( dset1[var][:,:,:,:] - dset2[var][:,:,:,:] ) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 4235, in __sub__ return subtract(self, other) File "/usr/local/lib/python3.10/dist-packages/numpy/ma/core.py", line 1020, in __call__ result = self.f(da, db, *args, **kwargs) ValueError: operands could not be broadcast together with shapes (864,58,1,1) (0,58,1,1) script returned exit code 143 [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: bce64096-6e87-4a97-be8b-1af1aa65a32a Finished: ABORTED