Started by user <a href='/jenkins/user/huebler' class='jenkins-table__link model-link model-link--float'>Gunther Huebler</a>
Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 50a5528a55591d69e8b704dccebe1e7d6baa2669 (refs/remotes/origin/master)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10
Commit message: "Small bug fix in fill_holes_parallel on GPU"
 &gt; git rev-list --no-walk 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Update sys_admin Repo">[Pipeline] { (Update sys_admin Repo)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Python Test">[Pipeline] { (Run Python Test)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test

Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>

Output Save Mode: all

Using branch: master

Making list from 'UnresolvedCommits':
	- 665f3896481654acdb49de9afae25d7a9b24a81c
	- f3de007e9528afc6cc2d71090bce5c6c53337152
	- 50a5528a55591d69e8b704dccebe1e7d6baa2669

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -gpu openacc', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\npython run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in']

Diffing command: run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 665f3896481654acdb49de9afae25d7a9b24a81c
Parsing message from commit: f3de007e9528afc6cc2d71090bce5c6c53337152
Parsing message from commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669

Checking Commit: 665f3896481654acdb49de9afae25d7a9b24a81c
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: f3de007e9528afc6cc2d71090bce5c6c53337152
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out 50a5528a55591d69e8b704dccebe1e7d6baa2669
	Running: 'python compile.py -gpu openacc'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in'

================== WARNING ==================
Commit:  50a5528a55591d69e8b704dccebe1e7d6baa2669

There was a problem copying the output.
Did the run complete?
Is the output path correct? output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Checking out ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
	Running: 'python compile.py -gpu openacc'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in'

================== WARNING ==================
Commit:  ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f

There was a problem copying the output.
Did the run complete?
Is the output path correct? output

The run will continue, and this commit will be
considered unresolved.
===========================================
	ISSUE WITH COMMIT DETECTED: 50a5528a55591d69e8b704dccebe1e7d6baa2669 differs from ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f

Finding all BIT_CHANGING commits in range: ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...50a5528a55591d69e8b704dccebe1e7d6baa2669
	Checking out 665f3896481654acdb49de9afae25d7a9b24a81c
	Running: 'python compile.py -gpu openacc'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in'

================== WARNING ==================
Commit:  665f3896481654acdb49de9afae25d7a9b24a81c

There was a problem copying the output.
Did the run complete?
Is the output path correct? output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f already failed. Will not run again
	Checking out f3de007e9528afc6cc2d71090bce5c6c53337152
	Running: 'python compile.py -gpu openacc'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
	Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
	Running: 'python run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in'

================== WARNING ==================
Commit:  f3de007e9528afc6cc2d71090bce5c6c53337152

There was a problem copying the output.
Did the run complete?
Is the output path correct? output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 665f3896481654acdb49de9afae25d7a9b24a81c already failed. Will not run again
	Commit 50a5528a55591d69e8b704dccebe1e7d6baa2669 already failed. Will not run again
	Commit f3de007e9528afc6cc2d71090bce5c6c53337152 already failed. Will not run again
	Found:
		665f3896481654acdb49de9afae25d7a9b24a81c
		f3de007e9528afc6cc2d71090bce5c6c53337152
		50a5528a55591d69e8b704dccebe1e7d6baa2669

=============================== Test Results ===============================

Commit Range Checked = ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...50a5528a55591d69e8b704dccebe1e7d6baa2669

New Unresolved Commits:
	665f3896481654acdb49de9afae25d7a9b24a81c
	f3de007e9528afc6cc2d71090bce5c6c53337152
	50a5528a55591d69e8b704dccebe1e7d6baa2669

No fake BIT_CHANGING commits found.

Remaining Unresolved Commits (oldest commit is listed first):
	665f3896481654acdb49de9afae25d7a9b24a81c
	f3de007e9528afc6cc2d71090bce5c6c53337152
	50a5528a55591d69e8b704dccebe1e7d6baa2669

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669

Ignoring 50a5528a55591d69e8b704dccebe1e7d6baa2669 since it failed to produce output.
Ignoring f3de007e9528afc6cc2d71090bce5c6c53337152 since it failed to produce output.
Ignoring 665f3896481654acdb49de9afae25d7a9b24a81c since it failed to produce output.

=============================== Cleanup ===============================

Not removing any generated output.

================== Unresolved Commit Status ==================

Remaining Unresolved Commits (oldest commit is listed first):
	665f3896481654acdb49de9afae25d7a9b24a81c
	f3de007e9528afc6cc2d71090bce5c6c53337152
	50a5528a55591d69e8b704dccebe1e7d6baa2669

================== FAILED Commits ==================

These are the commits which entirely failed to produce output: 
	50a5528a55591d69e8b704dccebe1e7d6baa2669
	ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
	665f3896481654acdb49de9afae25d7a9b24a81c
	f3de007e9528afc6cc2d71090bce5c6c53337152

Exiting with code: 1
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="24" startId="24" enclosingId="23">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="24">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="26" enclosingId="25">[Pipeline] emailext
</span><span class="pipeline-node-26">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="27" startId="25">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="28" startId="24">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="29" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="30" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="31" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="32" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="33" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="34" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="35" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE