Started by user <a href='/jenkins/user/huebler' class='jenkins-table__link model-link model-link--float'>Gunther Huebler</a>
Obtained jenkins_tests/clubb_multi_col_BFB_nvhpc_test/Jenkinsfile from git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/clubb_multi_col_BFB_nvhpc_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/clubb_multi_col_BFB_nvhpc_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 (refs/remotes/origin/master)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 # timeout=10
Commit message: "Adding multi_col cases to run_bindiff.py and adding new multicol BFBness test."
First time build. Skipping changelog.
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Clone SysAdmin to tmp">[Pipeline] { (Clone SysAdmin to tmp)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Python Test">[Pipeline] { (Run Python Test)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_multi_col_BFB_nvhpc_test/config
usage: create_multi_col_params.py [-h] -n N [-param_file PARAM_FILE]
                                  [-l_multi_col_output L_MULTI_COL_OUTPUT]
                                  [-out_file OUT_FILE] [-mode MODE]
create_multi_col_params.py: error: unrecognized arguments: repo/run_scripts/run_scm_all.bash --min-cases
usage: create_multi_col_params.py [-h] -n N [-param_file PARAM_FILE]
                                  [-l_multi_col_output L_MULTI_COL_OUTPUT]
                                  [-out_file OUT_FILE] [-mode MODE]
create_multi_col_params.py: error: unrecognized arguments: repo/run_scripts/run_scm_all.bash --min-cases
usage: create_multi_col_params.py [-h] -n N [-param_file PARAM_FILE]
                                  [-l_multi_col_output L_MULTI_COL_OUTPUT]
                                  [-out_file OUT_FILE] [-mode MODE]
create_multi_col_params.py: error: unrecognized arguments: repo/run_scripts/run_scm_all.bash --min-cases

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/jenkins_BFB_test_workspaces/clubb_multi_col_BFB_nvhpc_test
Trying to clone repo...

Cloned repo location: /home/jenkins/jenkins_BFB_test_workspaces/clubb_multi_col_BFB_nvhpc_test/repo

Output Save Mode: none

Using branch: master

Making list from 'UnresolvedCommits':

Run Output Path: repo/output

Run commands: ['repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash', '\nrm -rf repo/output', '\nmkdir repo/output', '\nrepo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in\nrepo/run_scripts/run_scm_all.bash -p repo/run_scripts/clubb_params_multi_col.in --min-cases']

Diffing command: repo/run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 91fc9735c426ef0fce29ebab86c6d1c7e4638b90
	Found: BIT_CHANGING
Parsing message from commit: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34

Checking Commit: 91fc9735c426ef0fce29ebab86c6d1c7e4638b90
	Checking out 7726602feef7f94a81bfa01ac55336701d5d2dfc
	Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash'
	Running: '
rm -rf repo/output'
	Running: '
mkdir repo/output'
	Running: '
repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in
repo/run_scripts/run_scm_all.bash -p repo/run_scripts/clubb_params_multi_col.in --min-cases'

================== WARNING ==================
Commit:  7726602feef7f94a81bfa01ac55336701d5d2dfc

There was a problem copying the output.
Did the run complete?
Is the output path correct? repo/output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 7726602feef7f94a81bfa01ac55336701d5d2dfc already failed. Will not run again
	ISSUE WITH COMMIT DETECTED: 7726602feef7f94a81bfa01ac55336701d5d2dfc differs from 7726602feef7f94a81bfa01ac55336701d5d2dfc
	Checking out 91fc9735c426ef0fce29ebab86c6d1c7e4638b90
	Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash'
	Running: '
rm -rf repo/output'
	Running: '
mkdir repo/output'
	Running: '
repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in
repo/run_scripts/run_scm_all.bash -p repo/run_scripts/clubb_params_multi_col.in --min-cases'

================== WARNING ==================
Commit:  91fc9735c426ef0fce29ebab86c6d1c7e4638b90

There was a problem copying the output.
Did the run complete?
Is the output path correct? repo/output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 7726602feef7f94a81bfa01ac55336701d5d2dfc already failed. Will not run again
	Commit '91fc9735c426ef0fce29ebab86c6d1c7e4638b90' is BIT_CHANGING and properly labelled as such.

Checking Commit: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34
	Running: 'repo/compile/compile.bash -c repo/compile/config/linux_x86_64_nvhpc_gpu_openacc.bash'
	Running: '
rm -rf repo/output'
	Running: '
mkdir repo/output'
	Running: '
repo/run_scripts/create_multi_col_params.py -n 4 -out_file repo/run_scripts/clubb_params_multi_col.in -param_file repo/input/tunable_parameters/tunable_parameters.in
repo/run_scripts/run_scm_all.bash -p repo/run_scripts/clubb_params_multi_col.in --min-cases'

================== WARNING ==================
Commit:  4cc54e585f1e7e0a4308d1099292cddf3bcf1b34

There was a problem copying the output.
Did the run complete?
Is the output path correct? repo/output

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 91fc9735c426ef0fce29ebab86c6d1c7e4638b90 already failed. Will not run again
	ISSUE WITH COMMIT DETECTED: 4cc54e585f1e7e0a4308d1099292cddf3bcf1b34 differs from 91fc9735c426ef0fce29ebab86c6d1c7e4638b90
Traceback (most recent call last):
  File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 361, in rev_parse
    obj = to_commit(obj)
  File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 208, in to_commit
    if obj.type == "tag":
AttributeError: 'NoneType' object has no attribute 'type'

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py", line 56, in &lt;module&gt;
    main()
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py", line 43, in main
    exit_code = test.run_test()
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 335, in run_test
    problem_commits, fake_bc_commits = self.find_problem_commits(bit_changing_commits)
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 472, in find_problem_commits
    problem_commits = problem_commits + self.find_all_bc_commits_in_range(commit_range)
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 735, in find_all_bc_commits_in_range
    commits_to_check = self.commits_in_range(commit_range[0], commit_range[1])
  File "/home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/tests/bit_diff_test.py", line 806, in commits_in_range
    commits_to_check.append(self.repo.commit(hash))
  File "/usr/local/lib/python3.10/dist-packages/git/repo/base.py", line 660, in commit
    return self.rev_parse(str(rev) + "^0")
  File "/usr/local/lib/python3.10/dist-packages/git/repo/fun.py", line 375, in rev_parse
    raise BadName(
gitdb.exc.BadName: Ref 'Invalid revision spec '^0' - not enough parent commits to reach '^0'' did not resolve to an object
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="24" startId="24" enclosingId="23">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="24">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="26" enclosingId="25">[Pipeline] emailext
</span><span class="pipeline-node-26">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="27" startId="25">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="28" startId="24">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="29" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="30" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="31" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="32" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="33" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="34" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="35" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE