<workflowRun _class='org.jenkinsci.plugins.workflow.job.WorkflowRun'><action _class='hudson.model.CauseAction'><cause _class='hudson.model.Cause$UserIdCause'><shortDescription>Started by user Gunther Huebler</shortDescription><userId>huebler</userId><userName>Gunther Huebler</userName></cause></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>673</buildNumber><marked><SHA1>1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e</SHA1><branch><SHA1>1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e</SHA1><branch><SHA1>1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e</SHA1><branch><SHA1>1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'><artifactsUrl>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/673/artifact</artifactsUrl><changesUrl>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/changes</changesUrl><displayUrl>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/673/pipeline-overview</displayUrl><testsUrl>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/673/testReport</testsUrl></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'><restartEnabled>false</restartEnabled><restartableStage>Update sys_admin Repo</restartableStage><restartableStage>Run Python Test</restartableStage></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'><node _class='org.jenkinsci.plugins.workflow.graph.FlowStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepAtomNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepAtomNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepStartNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepAtomNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.cps.nodes.StepEndNode'></node><node _class='org.jenkinsci.plugins.workflow.graph.FlowEndNode'></node></action><action></action><action></action><action></action><building>false</building><displayName>#673</displayName><duration>2436792</duration><estimatedDuration>446212</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #673</fullDisplayName><id>673</id><keepLog>false</keepLog><number>673</number><queueId>9623</queueId><result>SUCCESS</result><timestamp>1791075458549</timestamp><url>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/673/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/stats_netcdf.F90</affectedPath><commitId>5a618af3b1fa969ad22fc01e46db81f7bc71f449</commitId><timestamp>1791058620000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Serialize NetCDF statistics output across OpenMP threads
</comment><date>2026-10-03 15:17:00 -0500</date><id>5a618af3b1fa969ad22fc01e46db81f7bc71f449</id><msg>Serialize NetCDF statistics output across OpenMP threads</msg><path><editType>edit</editType><file>src/CLUBB_core/stats_netcdf.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><affectedPath>run_scripts/run_tuner.py</affectedPath><affectedPath>jenkins_tests/clubb_python/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_tuner/Jenkinsfile</affectedPath><affectedPath>run_scripts/README.md</affectedPath><affectedPath>tests/test_monoflux_limiter_GPU.py</affectedPath><affectedPath>tests/pytests/test_bindiff_report.py</affectedPath><affectedPath>utilities/pytests/test_time_clubb.py</affectedPath><affectedPath>CMakeLists.txt</affectedPath><affectedPath>experimental/experimental_pdfs/python/dash_additions/utilities/refresh_pdf9_parcel_ensemble_lab.py</affectedPath><affectedPath>tests/run_clubb_conv_test.py</affectedPath><affectedPath>tests/README.md</affectedPath><affectedPath>run_scripts/run_scm_loss.py</affectedPath><affectedPath>postprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.sh</affectedPath><affectedPath>tests/check_budget_balance.py</affectedPath><affectedPath>utilities/time_clubb.py</affectedPath><affectedPath>utilities/pytests/test_run_script_arguments.py</affectedPath><affectedPath>utilities/create_case_namelist.py</affectedPath><affectedPath>dash_app/pytests/test_pyplotgen_export.py</affectedPath><affectedPath>tests/run_jax_vs_fortran_cases.py</affectedPath><affectedPath>dash_app/tune_tab/runtime.py</affectedPath><affectedPath>jenkins_tests/clubb_plots/Jenkinsfile</affectedPath><affectedPath>tests/test_fire_tuner.py</affectedPath><affectedPath>jenkins_tests/clubb_column_mirror/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_generalized_grid/Jenkinsfile</affectedPath><affectedPath>tuner/tune_clubb.py</affectedPath><affectedPath>dash_app/compile_tab/runtime.py</affectedPath><affectedPath>tests/run_thread_test.py</affectedPath><affectedPath>jenkins_tests/clubb_jax/Jenkinsfile</affectedPath><affectedPath>tests/check_mirrored_multi_col_output.py</affectedPath><affectedPath>jenkins_tests/clubb_single_prec_build/Jenkinsfile</affectedPath><affectedPath>tests/run_G_unit_tests.py</affectedPath><affectedPath>run_scripts/convergence_run/convergence_config.py</affectedPath><affectedPath>postprocessing/pyplotgen/README.md</affectedPath><affectedPath>postprocessing/pyplotgen/pyplotgen.py</affectedPath><affectedPath>clubb_jax/tests/test_jax_cli_options.py</affectedPath><affectedPath>tests/run_python_vs_fortran_cases.py</affectedPath><affectedPath>jenkins_tests/clubb_driver/Jenkinsfile</affectedPath><affectedPath>clubb_jax/tests/test_runtime_info.py</affectedPath><affectedPath>dash_app/compile_tab/build_selector.py</affectedPath><affectedPath>input/flag_sets/README.md</affectedPath><affectedPath>clubb_jax/README.md</affectedPath><affectedPath>run_scripts/run_tuner_job.py</affectedPath><affectedPath>tuner/presets.py</affectedPath><affectedPath>tests/run_restart_test.py</affectedPath><affectedPath>dash_app/pytests/test_profile_tab.py</affectedPath><affectedPath>tests/run_loss_output_consistency.py</affectedPath><affectedPath>tuner/job_runtime.py</affectedPath><affectedPath>tests/pytests/test_jax_compare_forwarding.py</affectedPath><affectedPath>utilities/parse_argument_list/replace_err_code_type.py</affectedPath><affectedPath>tuner/system_defaults.py</affectedPath><affectedPath>clubb_jax/run_jax.py</affectedPath><affectedPath>utilities/print_tunable_parameters_table.py</affectedPath><affectedPath>tests/run_bindiff_w_flags.py</affectedPath><affectedPath>tests/run_jax_comparison_mutation_test.py</affectedPath><affectedPath>jenkins_tests/clubb_gpu_async_output_matching/Jenkinsfile</affectedPath><affectedPath>utilities/benchmark_converter.py</affectedPath><affectedPath>jenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfile</affectedPath><affectedPath>utilities/api_analysis/run_full_api_diagnostics.bash</affectedPath><affectedPath>utilities/CLUBBStandardsCheck.py</affectedPath><affectedPath>utilities/split_stats_to_legacy.py</affectedPath><affectedPath>jenkins_tests/clubb_basic_full_run/Jenkinsfile</affectedPath><affectedPath>run_scripts/run_scm_all.py</affectedPath><affectedPath>run_scripts/run_clubb_and_pyplotgen.py</affectedPath><affectedPath>dash_app/profile_tab/runtime.py</affectedPath><affectedPath>jenkins_tests/clubb_gpu_vs_cpu_diffness/Jenkinsfile</affectedPath><affectedPath>tests/run_stats_output_consistency.py</affectedPath><affectedPath>compile.py</affectedPath><affectedPath>dash_app/pytests/test_compile_tab_build_status.py</affectedPath><affectedPath>clubb_jax/runtime_info.py</affectedPath><affectedPath>clubb_jax/tests/test_kk_rico_oracle.py</affectedPath><affectedPath>utilities/api_analysis/create_module_table.py</affectedPath><affectedPath>utilities/api_analysis/api_commitment_test.py</affectedPath><affectedPath>utilities/setup_python_venv.py</affectedPath><affectedPath>dash_app/run_tab/runtime.py</affectedPath><affectedPath>LLM_prompts/update_python_api_and_drivers.md</affectedPath><affectedPath>utilities/convert_to_async.py</affectedPath><affectedPath>tests/pytests/test_column_mirror.py</affectedPath><affectedPath>tests/run_silhs_test.py</affectedPath><affectedPath>jenkins_tests/clubb_G_unit/Jenkinsfile</affectedPath><affectedPath>dash_app/plot_tab/pyplotgen_runtime.py</affectedPath><affectedPath>tests/analyze_tuner_sample_history.py</affectedPath><affectedPath>run_scripts/run_scm.py</affectedPath><affectedPath>run_scripts/run_bindiff_all.py</affectedPath><affectedPath>tests/pytests/test_run_clubb_conv_test.py</affectedPath><affectedPath>postprocessing/pyplotgen/config/Style_definitions.py</affectedPath><affectedPath>utilities/create_multi_col_params.py</affectedPath><affectedPath>tuner/README.md</affectedPath><affectedPath>postprocessing/pyplotgen/src/CaseGallerySetup.py</affectedPath><commitId>1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e</commitId><timestamp>1791075166000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Standardize script arguments  (#1373)

This is mainly changing the names of arguments to be clearer and more consistent, and replacing the usage of double dash options with single ones (I just like it better that way).

* Standardize script arguments and worker defaults

* Forward model options through the Python comparison harness

* Reuse existing modules for script argument helpers

* Fix script argument cleanup integration regressions

* Update API commitment wrapper for renamed exclusion option
</comment><date>2026-10-03 19:52:46 -0500</date><id>1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e</id><msg>Standardize script arguments  (#1373)</msg><path><editType>edit</editType><file>postprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.sh</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_column_mirror/Jenkinsfile</file></path><path><editType>edit</editType><file>dash_app/profile_tab/runtime.py</file></path><path><editType>edit</editType><file>tests/pytests/test_jax_compare_forwarding.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_driver/Jenkinsfile</file></path><path><editType>edit</editType><file>utilities/create_case_namelist.py</file></path><path><editType>edit</editType><file>dash_app/compile_tab/runtime.py</file></path><path><editType>edit</editType><file>tuner/tune_clubb.py</file></path><path><editType>edit</editType><file>run_scripts/run_bindiff_all.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/Style_definitions.py</file></path><path><editType>edit</editType><file>clubb_jax/runtime_info.py</file></path><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path><path><editType>edit</editType><file>dash_app/pytests/test_profile_tab.py</file></path><path><editType>edit</editType><file>LLM_prompts/update_python_api_and_drivers.md</file></path><path><editType>edit</editType><file>tests/run_loss_output_consistency.py</file></path><path><editType>edit</editType><file>utilities/create_multi_col_params.py</file></path><path><editType>edit</editType><file>clubb_jax/tests/test_jax_cli_options.py</file></path><path><editType>edit</editType><file>run_scripts/run_tuner_job.py</file></path><path><editType>edit</editType><file>utilities/api_analysis/run_full_api_diagnostics.bash</file></path><path><editType>edit</editType><file>tests/pytests/test_column_mirror.py</file></path><path><editType>edit</editType><file>tuner/presets.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_basic_full_run/Jenkinsfile</file></path><path><editType>edit</editType><file>utilities/convert_to_async.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_single_prec_build/Jenkinsfile</file></path><path><editType>edit</editType><file>clubb_jax/tests/test_runtime_info.py</file></path><path><editType>edit</editType><file>run_scripts/run_scm_all.py</file></path><path><editType>edit</editType><file>tests/run_G_unit_tests.py</file></path><path><editType>edit</editType><file>utilities/api_analysis/api_commitment_test.py</file></path><path><editType>edit</editType><file>tests/run_clubb_conv_test.py</file></path><path><editType>edit</editType><file>CMakeLists.txt</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/pyplotgen.py</file></path><path><editType>edit</editType><file>tests/run_bindiff_w_flags.py</file></path><path><editType>edit</editType><file>utilities/setup_python_venv.py</file></path><path><editType>edit</editType><file>tests/check_budget_balance.py</file></path><path><editType>edit</editType><file>tuner/system_defaults.py</file></path><path><editType>edit</editType><file>run_scripts/convergence_run/convergence_config.py</file></path><path><editType>edit</editType><file>utilities/parse_argument_list/replace_err_code_type.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_jax/Jenkinsfile</file></path><path><editType>edit</editType><file>run_scripts/run_scm.py</file></path><path><editType>edit</editType><file>utilities/CLUBBStandardsCheck.py</file></path><path><editType>edit</editType><file>dash_app/run_tab/runtime.py</file></path><path><editType>edit</editType><file>dash_app/pytests/test_pyplotgen_export.py</file></path><path><editType>edit</editType><file>tests/run_jax_vs_fortran_cases.py</file></path><path><editType>edit</editType><file>tests/run_restart_test.py</file></path><path><editType>edit</editType><file>run_scripts/run_clubb_and_pyplotgen.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_tuner/Jenkinsfile</file></path><path><editType>edit</editType><file>tuner/job_runtime.py</file></path><path><editType>edit</editType><file>utilities/pytests/test_time_clubb.py</file></path><path><editType>edit</editType><file>clubb_jax/run_jax.py</file></path><path><editType>edit</editType><file>tests/README.md</file></path><path><editType>edit</editType><file>dash_app/tune_tab/runtime.py</file></path><path><editType>edit</editType><file>tests/analyze_tuner_sample_history.py</file></path><path><editType>edit</editType><file>experimental/experimental_pdfs/python/dash_additions/utilities/refresh_pdf9_parcel_ensemble_lab.py</file></path><path><editType>edit</editType><file>tests/pytests/test_bindiff_report.py</file></path><path><editType>edit</editType><file>tests/run_silhs_test.py</file></path><path><editType>edit</editType><file>tests/run_jax_comparison_mutation_test.py</file></path><path><editType>edit</editType><file>compile.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_python/Jenkinsfile</file></path><path><editType>edit</editType><file>input/flag_sets/README.md</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/README.md</file></path><path><editType>edit</editType><file>tests/run_stats_output_consistency.py</file></path><path><editType>edit</editType><file>utilities/benchmark_converter.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_gpu_async_output_matching/Jenkinsfile</file></path><path><editType>edit</editType><file>clubb_jax/README.md</file></path><path><editType>add</editType><file>utilities/pytests/test_run_script_arguments.py</file></path><path><editType>edit</editType><file>utilities/split_stats_to_legacy.py</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/src/CaseGallerySetup.py</file></path><path><editType>edit</editType><file>utilities/print_tunable_parameters_table.py</file></path><path><editType>edit</editType><file>tests/test_monoflux_limiter_GPU.py</file></path><path><editType>edit</editType><file>jenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfile</file></path><path><editType>edit</editType><file>dash_app/pytests/test_compile_tab_build_status.py</file></path><path><editType>edit</editType><file>run_scripts/README.md</file></path><path><editType>edit</editType><file>tests/run_thread_test.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_G_unit/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_generalized_grid/Jenkinsfile</file></path><path><editType>edit</editType><file>clubb_jax/tests/test_kk_rico_oracle.py</file></path><path><editType>edit</editType><file>tests/pytests/test_run_clubb_conv_test.py</file></path><path><editType>edit</editType><file>dash_app/plot_tab/pyplotgen_runtime.py</file></path><path><editType>edit</editType><file>tests/check_mirrored_multi_col_output.py</file></path><path><editType>edit</editType><file>tests/run_python_vs_fortran_cases.py</file></path><path><editType>edit</editType><file>tests/test_fire_tuner.py</file></path><path><editType>edit</editType><file>tuner/README.md</file></path><path><editType>edit</editType><file>utilities/time_clubb.py</file></path><path><editType>edit</editType><file>run_scripts/run_scm_loss.py</file></path><path><editType>edit</editType><file>utilities/api_analysis/create_module_table.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_plots/Jenkinsfile</file></path><path><editType>edit</editType><file>dash_app/compile_tab/build_selector.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_gpu_vs_cpu_diffness/Jenkinsfile</file></path><path><editType>edit</editType><file>run_scripts/run_tuner.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName><id>huebler</id></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName><id>noreply</id></culprit><inProgress>false</inProgress><nextBuild><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>674</buildNumber><marked><SHA1>feb2438c46510eaadecd3e0c3bdede3df2939ac1</SHA1><branch><SHA1>feb2438c46510eaadecd3e0c3bdede3df2939ac1</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>feb2438c46510eaadecd3e0c3bdede3df2939ac1</SHA1><branch><SHA1>feb2438c46510eaadecd3e0c3bdede3df2939ac1</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>feb2438c46510eaadecd3e0c3bdede3df2939ac1</SHA1><branch><SHA1>feb2438c46510eaadecd3e0c3bdede3df2939ac1</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#674</displayName><duration>2145329</duration><estimatedDuration>446212</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #674</fullDisplayName><id>674</id><keepLog>false</keepLog><number>674</number><queueId>9807</queueId><result>SUCCESS</result><timestamp>1791188947592</timestamp><url>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/674/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>clubb_jax/AGENTS.md</affectedPath><affectedPath>LLM_prompts/script_cli_conventions.md</affectedPath><affectedPath>LLM_prompts/update_python_api_and_drivers.md</affectedPath><affectedPath>LLM_prompts/jenkins_workflow.md</affectedPath><affectedPath>LLM_prompts/dash_app_workflow.md</affectedPath><affectedPath>LLM_prompts/port_underlying_fortran_to_other_languages.md</affectedPath><affectedPath>LLM_prompts/numerical_regression_workflow.md</affectedPath><affectedPath>.agents/skills/clubb-jax-port/SKILL.md</affectedPath><affectedPath>LLM_prompts/README.md</affectedPath><affectedPath>AGENTS.md</affectedPath><affectedPath>.agents/skills/clubb-script-cli/SKILL.md</affectedPath><affectedPath>LLM_prompts/fortran_column_refactor.md</affectedPath><affectedPath>LLM_prompts/SHORTCUTS.md</affectedPath><affectedPath>LLM_prompts/update_host_models_after_clubb_changes.md</affectedPath><affectedPath>LLM_prompts/jax_porting_workflow.md</affectedPath><commitId>d1c3f80378f8621f388662593c7e5a47f1847b35</commitId><timestamp>1791138711000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Improve agent workflow discovery and completion evidence (#1375)

This is just a rework of out LLM shortcuts. I had chatgpt go through a bunch of sessions and investigate my inefficiencies in my workflow (like how often I have to ask for corrections for things that were already instructions in these shortcuts), and had it rework our shortcuts.

The things done seem to make sense - they're a little shorter and more concise, broken up a bit better, include some extra things. Hard to say if any of it's effective though - hopefully I'll notice an improvement with things
</comment><date>2026-10-04 13:31:51 -0500</date><id>d1c3f80378f8621f388662593c7e5a47f1847b35</id><msg>Improve agent workflow discovery and completion evidence (#1375)</msg><path><editType>add</editType><file>LLM_prompts/README.md</file></path><path><editType>edit</editType><file>AGENTS.md</file></path><path><editType>add</editType><file>LLM_prompts/script_cli_conventions.md</file></path><path><editType>add</editType><file>LLM_prompts/numerical_regression_workflow.md</file></path><path><editType>edit</editType><file>LLM_prompts/update_python_api_and_drivers.md</file></path><path><editType>edit</editType><file>LLM_prompts/update_host_models_after_clubb_changes.md</file></path><path><editType>add</editType><file>LLM_prompts/fortran_column_refactor.md</file></path><path><editType>add</editType><file>.agents/skills/clubb-script-cli/SKILL.md</file></path><path><editType>edit</editType><file>LLM_prompts/SHORTCUTS.md</file></path><path><editType>edit</editType><file>LLM_prompts/dash_app_workflow.md</file></path><path><editType>add</editType><file>LLM_prompts/jax_porting_workflow.md</file></path><path><editType>add</editType><file>LLM_prompts/jenkins_workflow.md</file></path><path><editType>edit</editType><file>LLM_prompts/port_underlying_fortran_to_other_languages.md</file></path><path><editType>add</editType><file>clubb_jax/AGENTS.md</file></path><path><editType>add</editType><file>.agents/skills/clubb-jax-port/SKILL.md</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>clubb_jax/src/Microphys/cloud_sed_module.py</affectedPath><affectedPath>clubb_jax/src/CLUBB_core/precipitation_fraction.py</affectedPath><affectedPath>clubb_jax/tests/test_silhs_fortran_oracle.py</affectedPath><affectedPath>clubb_jax/tests/test_microphysics_port_structure.py</affectedPath><affectedPath>clubb_jax/tests/test_silhs_sampling.py</affectedPath><affectedPath>clubb_jax/src/Microphys/ice_dfsn_module.py</affectedPath><affectedPath>clubb_jax/src/Microphys/KK_microphys_module.py</affectedPath><affectedPath>clubb_jax/src/SILHS/est_kessler_microphys_module.py</affectedPath><affectedPath>clubb_jax/src/SILHS/latin_hypercube_arrays.py</affectedPath><affectedPath>clubb_jax/src/SILHS/silhs_api_module.py</affectedPath><affectedPath>clubb_jax/src/SILHS/lh_microphys_var_covar_module.py</affectedPath><affectedPath>clubb_jax/src/Microphys/estimate_scm_microphys_module.py</affectedPath><affectedPath>clubb_jax/tests/test_silhs_driver.py</affectedPath><affectedPath>clubb_jax/JAX_CONVERSION_PLAN.md</affectedPath><affectedPath>clubb_jax/tests/test_silhs_diagnostics.py</affectedPath><affectedPath>tests/run_jax_vs_fortran_cases.py</affectedPath><affectedPath>clubb_jax/src/CLUBB_core/fill_holes.py</affectedPath><affectedPath>clubb_jax/src/clubb_case_initalization.py</affectedPath><affectedPath>clubb_jax/tests/test_microphysics_error_paths.py</affectedPath><affectedPath>clubb_jax/src/Input_fields/corr_varnce_input_reader.py</affectedPath><affectedPath>src/SILHS/latin_hypercube_driver_module.F90</affectedPath><affectedPath>clubb_jax/tests/test_microphysics_integration.py</affectedPath><affectedPath>clubb_jax/README.md</affectedPath><affectedPath>clubb_jax/src/SILHS/__init__.py</affectedPath><affectedPath>clubb_jax/src/SILHS/parameters_silhs.py</affectedPath><affectedPath>clubb_jax/src/Microphys/advance_microphys_module.py</affectedPath><affectedPath>tests/pytests/test_jax_compare_forwarding.py</affectedPath><affectedPath>clubb_jax/src/CLUBB_core/setup_clubb_pdf_params.py</affectedPath><affectedPath>clubb_jax/src/Microphys/gfdl_activation.py</affectedPath><affectedPath>clubb_jax/src/SILHS/latin_hypercube_driver_module.py</affectedPath><affectedPath>clubb_jax/src/Microphys/microphys_driver.py</affectedPath><affectedPath>clubb_jax/src/CLUBB_core/jax_stats.py</affectedPath><affectedPath>clubb_jax/src/Microphys/lh_microphys_driver_module.py</affectedPath><affectedPath>clubb_jax/src/Microphys/silhs_category_variance_module.py</affectedPath><affectedPath>LLM_prompts/SHORTCUTS.md</affectedPath><affectedPath>clubb_jax/tests/test_silhs_port_structure.py</affectedPath><affectedPath>LLM_prompts/update_host_models_after_clubb_changes.md</affectedPath><affectedPath>src/SILHS/parameters_silhs.F90</affectedPath><affectedPath>clubb_jax/tests/test_microphysics_host_errors.py</affectedPath><affectedPath>clubb_jax/src/Microphys/parameters_microphys.py</affectedPath><affectedPath>clubb_jax/src/SILHS/math_utilities.py</affectedPath><affectedPath>clubb_jax/src/SILHS/silhs_importance_sample_module.py</affectedPath><affectedPath>clubb_jax/src/SILHS/generate_uniform_sample_module.py</affectedPath><affectedPath>src/Microphys/microphys_init_cleanup.F90</affectedPath><affectedPath>clubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.py</affectedPath><affectedPath>clubb_jax/src/Microphys/morrison_microphys_module.py</affectedPath><affectedPath>src/SILHS/generate_uniform_sample_module.F90</affectedPath><affectedPath>clubb_jax/src/SILHS/transform_to_pdf_module.py</affectedPath><affectedPath>clubb_jax/SILHS_PORT_NOTES.md</affectedPath><affectedPath>clubb_jax/src/Microphys/microphys_init_cleanup.py</affectedPath><affectedPath>clubb_jax/src/CLUBB_core/stats_clubb_utilities.py</affectedPath><affectedPath>clubb_jax/src/Microphys/mixed_moment_PDF_integrals.py</affectedPath><affectedPath>clubb_jax/src/advance_clubb_to_end.py</affectedPath><affectedPath>clubb_jax/src/Microphys/coamps_microphys_driver_module.py</affectedPath><commitId>f51ab963e7cde71123d3afd8f77d077a35cf211f</commitId><timestamp>1791158488000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Jax silhs (#1372)

Adding silhs to jax.

To avoid randomness issues I added a silhs flag, l_lh_deterministic_test, that causes samples and random numbers to be generated in a deterministic order that is pretty basic but seems like a fine enough sampling method for a test that only matters for comparing jax to fortran matching. This required changing the fortran to have this deterministic test sample generation.

I added 3 new silhs tests:

rico_silhs with a 60s timestep matches up to 360 timestpes (6 hours)
lba_kk_silhs (lba with kk microphys instead of defauly morrison) passes up to 270ish steps, I set test to 240 steps
lba_silhs (with morrison) passes &lt;80, from past exploration this seems mainly due to morrison being in single precision

* Port SILHS sampling and microphysics coupling to JAX

Add native JAX Latin-hypercube sampling with explicit persistent permutation
state and case-owned initialization. Couple sampled states to KK and Morrison
microphysics in interactive and diagnostic modes, with weighted statistics,
substep averaging, and fatal-path/configuration guards.

Preserve Fortran routine structure, argument grouping, and source comments
throughout SILHS and the microphysics interface layer. Leave Fortran, MT95,
and the KK/Morrison numerical cores unchanged.

Validation: 103 focused sampling/interface/error-path checks and eight real
SILHS driver checks pass. Earlier interface/support validation and the
20-pair disabled-SILHS JAX/Fortran comparison also pass. Enabled SILHS random
stream parity is deferred to a future common-random-input comparison.

* Add deterministic SILHS comparisons and initialize JAX output grids

Add a default-off l_lh_deterministic_test flag to Fortran and JAX. Use
ordered strata and a shared four-value, binary-exact draw cycle in the
high-level LHS and overlap-pool routines, preserving sequence reuse and
leaving the native random generators unchanged. Reject independent
importance sampling and random starts in this comparison mode.

Add interactive RICO, LBA KK and native LBA Morrison configurations to the
JAX/Fortran comparison suite without relaxing the existing tolerances.
Initialize SILHS host statistics from JAX case setup so reduced statistics
files also contain Fortran's lh_zt and lh_sample_number coordinates.

Validation: Fortran build and source checks pass; 581 raw sampling values
match exactly; 59 sampler/contract/forwarding checks and 46 output/support
checks pass. RICO matches through 360 steps at 60s with standard statistics
and with reduced statistics at debug 0.

Document the remaining comparison limits: LBA KK's repeating-cycle Nrp2
difference starts at saved prefix 274, while its configured cap remains
275. Native Morrison's selected scope was verified with midpoint inputs;
the repeating-cycle comparison was not rerun after the requested stop.

* Match Fortran SILHS sampling precision and overlap

Preserve default-real rounding in inverse-normal coefficients before
promotion to the sample dtype. Apply vertical overlap to starting-level
straight Monte Carlo samples and retain source sampling failure status.

Add a live Fortran inverse-normal oracle and regressions for overlap and
the source sample-count check. Keep comparison limits and tolerances.

* Restore SILHS diagnostics and microphysics host error guards

Carry weight-limiter and Kessler diagnostic failures through compiled
returns and ErrInfo. Preserve Fortran debug guards at the host boundaries
so negative-debug tracing can retain per-column failure status.

Write ordered microphysics/SILHS settings and approximate correlations
from initialization into the standalone setup file. Keep report lifetime
and output-name resolution outside the timestep driver.

Add focused failure/report regressions and update the port notes with
repeating-input comparisons and the native Morrison compiler sensitivity.

* Document deterministic SILHS comparison patterns

Explain the ordered permutation, repeating within-stratum offsets and overlap
pool at every Fortran deterministic randomness override. Mirror the explanation
in JAX, including index phases, sequence reuse and independence from RNG state.

Executable statements are unchanged in both implementations; source/AST checks
confirm these changes only add comments.

* Use definition decorators for microphysics JIT boundaries

Move the existing PDF preparation, scheme tendency and hydrometeor transport
JIT boundaries onto their routine definitions with @partial(jax.jit, ...).
Keep the static arguments unchanged and call the source-named routines directly
from the standalone driver.

Update host injection and source-order checks for the canonical routine names.
Lightweight error/feedback fixtures still check eager and compiled routine
bodies; real standalone runs exercise the decorated entry points.

Validation: 140 focused tests; 28 passed, 2435 warnings in 453.39s (0:07:33); unchanged RICO360/LBAKK275
strict comparisons; supported whole-driver and reverse-mode tracing.

* Simplify deterministic SILHS sampling comments

Describe the repeatable-testing branches directly, with their base values and
index offsets. Show the first twelve pool entries for four columns, grouped by
sample, and use the same concise descriptions in the Fortran and JAX mirrors.

Only comments and argument documentation change; executable code is unchanged.

* Exclude E3SM from host compatibility updates

Keep the exclusion visible in shortcut discovery and the host workflow.
Treat sys_admin mappings as synchronization metadata, not the active host list.

* Shortening tests timesteps a bit and adding a space for niceness
</comment><date>2026-10-04 19:01:28 -0500</date><id>f51ab963e7cde71123d3afd8f77d077a35cf211f</id><msg>Jax silhs (#1372)</msg><path><editType>add</editType><file>clubb_jax/tests/test_silhs_fortran_oracle.py</file></path><path><editType>edit</editType><file>tests/pytests/test_jax_compare_forwarding.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/silhs_category_variance_module.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/transform_to_pdf_module.py</file></path><path><editType>add</editType><file>clubb_jax/tests/test_silhs_sampling.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/cloud_sed_module.py</file></path><path><editType>edit</editType><file>clubb_jax/src/clubb_case_initalization.py</file></path><path><editType>add</editType><file>clubb_jax/tests/test_silhs_port_structure.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/gfdl_activation.py</file></path><path><editType>edit</editType><file>clubb_jax/tests/test_microphysics_error_paths.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/math_utilities.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/generate_uniform_sample_module.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/morrison_microphys_module.py</file></path><path><editType>edit</editType><file>clubb_jax/src/CLUBB_core/setup_clubb_pdf_params.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/latin_hypercube_driver_module.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/est_kessler_microphys_module.py</file></path><path><editType>edit</editType><file>clubb_jax/tests/test_microphysics_integration.py</file></path><path><editType>edit</editType><file>clubb_jax/src/CLUBB_core/stats_clubb_utilities.py</file></path><path><editType>add</editType><file>clubb_jax/SILHS_PORT_NOTES.md</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/ice_dfsn_module.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/estimate_scm_microphys_module.py</file></path><path><editType>edit</editType><file>clubb_jax/src/CLUBB_core/precipitation_fraction.py</file></path><path><editType>edit</editType><file>src/SILHS/parameters_silhs.F90</file></path><path><editType>edit</editType><file>clubb_jax/src/Input_fields/corr_varnce_input_reader.py</file></path><path><editType>add</editType><file>clubb_jax/tests/test_microphysics_host_errors.py</file></path><path><editType>edit</editType><file>tests/run_jax_vs_fortran_cases.py</file></path><path><editType>edit</editType><file>clubb_jax/src/CLUBB_core/jax_stats.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/lh_microphys_var_covar_module.py</file></path><path><editType>add</editType><file>clubb_jax/tests/test_silhs_driver.py</file></path><path><editType>edit</editType><file>clubb_jax/JAX_CONVERSION_PLAN.md</file></path><path><editType>edit</editType><file>LLM_prompts/SHORTCUTS.md</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/coamps_microphys_driver_module.py</file></path><path><editType>edit</editType><file>src/SILHS/generate_uniform_sample_module.F90</file></path><path><editType>edit</editType><file>clubb_jax/src/CLUBB_core/fill_holes.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/microphys_driver.py</file></path><path><editType>edit</editType><file>clubb_jax/tests/test_microphysics_port_structure.py</file></path><path><editType>edit</editType><file>LLM_prompts/update_host_models_after_clubb_changes.md</file></path><path><editType>edit</editType><file>clubb_jax/README.md</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/parameters_silhs.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/mixed_moment_PDF_integrals.py</file></path><path><editType>edit</editType><file>src/Microphys/microphys_init_cleanup.F90</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/latin_hypercube_arrays.py</file></path><path><editType>edit</editType><file>src/SILHS/latin_hypercube_driver_module.F90</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/__init__.py</file></path><path><editType>add</editType><file>clubb_jax/tests/test_silhs_diagnostics.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/KK_microphys_module.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/silhs_importance_sample_module.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/lh_microphys_driver_module.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/microphys_init_cleanup.py</file></path><path><editType>edit</editType><file>clubb_jax/src/advance_clubb_to_end.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/advance_microphys_module.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/parameters_microphys.py</file></path><path><editType>add</editType><file>clubb_jax/src/SILHS/silhs_api_module.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>clubb_jax/src/advance_clubb_to_end.py</affectedPath><affectedPath>clubb_jax/SILHS_PORT_NOTES.md</affectedPath><commitId>9233e347a33c4422eaadde0503786b7f6134ebcf</commitId><timestamp>1791167559000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Clarify current SILHS comparison limits

Separate current LBA test caps from earlier longer validation runs.
Remove trailing spaces from the radiation-call blank line.
</comment><date>2026-10-04 21:32:39 -0500</date><id>9233e347a33c4422eaadde0503786b7f6134ebcf</id><msg>Clarify current SILHS comparison limits</msg><path><editType>edit</editType><file>clubb_jax/src/advance_clubb_to_end.py</file></path><path><editType>edit</editType><file>clubb_jax/SILHS_PORT_NOTES.md</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>clubb_jax/tests/test_kk_local_means.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_sigma_sqd_w.py</affectedPath><affectedPath>clubb_jax/tests/test_hydrometeor_mixed_moments.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_corr_varnce_module.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_kk_autoconversion.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_limits_f_x_responder.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_trivar_NNL_covar_eq.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_Nc_Ncn_eqns.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_nc_ncn_eqns.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_sfc_varnce.py</affectedPath><affectedPath>clubb_jax/tests/test_pdf_utilities.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_wp3_on_wp2.py</affectedPath><affectedPath>clubb_jax/tests/test_penta_faithful.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_ice_cloud_frac_component.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_sfc_varnce.py</affectedPath><affectedPath>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_vertical_coherence.py</affectedPath><affectedPath>clubb_jax/tests/test_read_surface_var_for_bc.py</affectedPath><affectedPath>clubb_jax/tests/test_constants.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_pdf_skewness_diagnostics.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_pdf_utils.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_integration.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_clip_skewness.py</affectedPath><affectedPath>clubb_jax/tests/test_differentiability.py</affectedPath><affectedPath>clubb_jax/tests/test_mixing_length.py</affectedPath><affectedPath>clubb_jax/tests/test_NNL_covar_vs_MM.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_constants.py</affectedPath><affectedPath>clubb_jax/tests/test_penta_solver.py</affectedPath><affectedPath>clubb_jax/tests/test_adg1_adg2_responder_params.py</affectedPath><affectedPath>clubb_jax/tests/test_kk_autoconversion.py</affectedPath><affectedPath>dash_app/pytests/test_dashboard_manager.py</affectedPath><affectedPath>clubb_jax/tests/test_mean_adv.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_config_flags_complete.py</affectedPath><affectedPath>clubb_jax/README.md</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_udt_roundtrip.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_sponge.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_lapack_wrap.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_no_dead_imports.py</affectedPath><affectedPath>clubb_jax/tests/test_stats_output_time.py</affectedPath><affectedPath>clubb_jax/tests/microphysics_test_inputs.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_luhar.py</affectedPath><affectedPath>tests/pytests/test_jax_compare_forwarding.py</affectedPath><affectedPath>clubb_jax/tests/test_cloud_feedback_sfclyr.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_inverse_hydrostatic.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_pdf_closure.py</affectedPath><affectedPath>clubb_jax/tests/test_mean_vert_vel_up_down.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_mean_vert_vel_up_down.py</affectedPath><affectedPath>clubb_jax/tests/test_bivar_LL_covar_partial_rr_Nr.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_quadrivar_NNLL_covar_eq_swap.py</affectedPath><affectedPath>clubb_jax/tests/test_sponge_damp_xp23.py</affectedPath><affectedPath>clubb_jax/tests/test_hydromet_pdf_parameter.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_wp4_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_covar_KK_mixt_frac_linearity.py</affectedPath><affectedPath>clubb_jax/tests/test_config_flags_complete.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_xp3.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_numerical_check.py</affectedPath><affectedPath>clubb_jax/tests/test_standalone_jax.py</affectedPath><affectedPath>dash_app/tests/run_dash_mixing_length_test.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_bivar_NL_mean_eq.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_stats_output_time.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_remap.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_driver.py</affectedPath><affectedPath>dash_app/pytests/test_tutorial_tab.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial_rr_Nr.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_xp2_xpyp.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_smooth_heaviside.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_diagnose_correlations_module.py</affectedPath><affectedPath>clubb_jax/tests/test_quadrivar_NNLL_covar_eq_swap.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_string_conversion.py</affectedPath><affectedPath>clubb_jax/tests/test_component_precip_frac_specify.py</affectedPath><affectedPath>clubb_jax/tests/test_gabls3_night_stability.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_soil_vegetation.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_error_code.py</affectedPath><affectedPath>clubb_jax/tests/test_bivar_NL_mean_eq.py</affectedPath><affectedPath>clubb_jax/tests/test_silhs_driver.py</affectedPath><affectedPath>dash_app/pytests/test_analysis.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_mirror_lower_triangular.py</affectedPath><affectedPath>clubb_jax/tests/test_wp2_wp3_terms.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_udt_return_contract.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_splat.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_t_in_k_module.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_tridiag_lu_solvers.py</affectedPath><affectedPath>jenkins_tests/clubb_jax/Jenkinsfile</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_utils.py</affectedPath><affectedPath>clubb_python_api/tests/test_advance_core_subs.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_xpyp_term_ta_godunov.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_numerical_check.py</affectedPath><affectedPath>clubb_jax/tests/test_splatting_autodiff.py</affectedPath><affectedPath>clubb_jax/tests/test_interpolation.py</affectedPath><affectedPath>clubb_python_api/tests/test_stats.py</affectedPath><affectedPath>.agents/skills/clubb-pytests/SKILL.md</affectedPath><affectedPath>clubb_jax/tests/test_calc_comp_mu_sigma_hm.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_forcing_port_structure.py</affectedPath><affectedPath>clubb_jax/tests/test_mono_flux_limiter.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_kk_covariance_batch.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_luhar_params.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_transport.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_differentiability.py</affectedPath><affectedPath>clubb_jax/tests/test_pdf_integrals_all_mm.py</affectedPath><affectedPath>clubb_python_api/tests/test_stats_registry.in</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_comp_mu_sigma_hm.py</affectedPath><affectedPath>clubb_jax/tests/test_pressure_sounding_z.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_params_init.py</affectedPath><affectedPath>clubb_jax/tests/test_calendar.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_liquid_cloud_frac_component.py</affectedPath><affectedPath>clubb_jax/tests/test_rcm_sat_adj.py</affectedPath><affectedPath>clubb_jax/tests/test_mirror_lower_triangular.py</affectedPath><affectedPath>clubb_jax/tests/test_new_tsdadg_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_hydromet_pdf_parameter.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_stats_accumulate.py</affectedPath><affectedPath>clubb_jax/tests/test_spec_hum_to_mixing_ratio.py</affectedPath><affectedPath>clubb_jax/tests/test_silhs_port_structure.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_xp3.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_mono_flux_limiter.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_cloud_feedback_sfclyr.py</affectedPath><affectedPath>clubb_jax/tests/test_forcing_port_structure.py</affectedPath><affectedPath>clubb_python_api/tests/test_python_port_api_coverage.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_kk_upscaled_variances.py</affectedPath><affectedPath>clubb_jax/tests/test_luhar_3d_driver.py</affectedPath><affectedPath>clubb_jax/tests/test_fill_holes_autodiff.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_matrix_solver_wrapper.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_new_tsdadg_pdf.py</affectedPath><affectedPath>clubb_jax/tests/test_ly93_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_stats_writer.py</affectedPath><affectedPath>clubb_jax/tests/test_T_in_K.py</affectedPath><affectedPath>clubb_jax/tests/test_covar_KK_mixt_frac_linearity.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_lapack_interfaces.py</affectedPath><affectedPath>jenkins_tests/clubb_python/Jenkinsfile</affectedPath><affectedPath>clubb_jax/tests/test_grid_operators.py</affectedPath><affectedPath>clubb_jax/tests/test_diagnose_upxp.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_wp4_pdf.py</affectedPath><affectedPath>clubb_jax/tests/test_windm_edsclrm_rhs.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_mixing_length.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_uv_tndcy.py</affectedPath><affectedPath>clubb_jax/tests/test_pdf_moment_integrals.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_python_port_api_coverage.py</affectedPath><affectedPath>clubb_jax/tests/test_xp2_xpyp_terms.py</affectedPath><affectedPath>clubb_jax/tests/test_microphysics_port_structure.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_liquid_cloud_frac_component.py</affectedPath><affectedPath>clubb_jax/tests/test_calculate_thvm.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_liq_water_path.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_sfc_varnce.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_comp_corr_norm.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_windm_edsclrm_rhs.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad_lba.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_ice_dfsn.py</affectedPath><affectedPath>clubb_jax/tests/test_hydrometp2_zt.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_adg1_adg2_responder_params.py</affectedPath><affectedPath>clubb_jax/tests/test_quadrivar_covar_const_limits.py</affectedPath><affectedPath>clubb_jax/tests/test_mixed_moment_pdf_integrals.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_rtp2_from_chi.py</affectedPath><affectedPath>clubb_jax/tests/test_xpyp_term_ta_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_param_names.py</affectedPath><affectedPath>clubb_jax/tests/test_smooth_heaviside.py</affectedPath><affectedPath>.agents/skills/clubb-session-retrospective/SKILL.md</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_port_structure.py</affectedPath><affectedPath>dash_app/pytests/auto_llm_generated_pytests/README.md</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_params_pack_roundtrip.py</affectedPath><affectedPath>clubb_jax/tests/test_pos_definite.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_const_vs_MM.py</affectedPath><affectedPath>clubb_jax/tests/test_pressure_coord_forcing.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_interpolation.py</affectedPath><affectedPath>clubb_jax/tests/test_advance_xp3_simplified.py</affectedPath><affectedPath>clubb_jax/tests/test_simple_rad.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_lapack_wrap.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_update_xp2_mc.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calculate_w_responder_params.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_tridiag_lu_solvers.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_matrix_solver_wrapper.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_setter_var_params.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_xm_wpxp.py</affectedPath><affectedPath>clubb_jax/AGENTS.md</affectedPath><affectedPath>clubb_jax/tests/test_calculate_w_responder_params.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial.py</affectedPath><affectedPath>clubb_jax/tests/test_radiation_port_structure.py</affectedPath><affectedPath>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_refresh_pdf9_parcel_ensemble_lab.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_standalone_jax.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_kk_local_means.py</affectedPath><affectedPath>clubb_jax/tests/test_close_luhar_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_surface_schemes.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_pdf_closure_driver.py</affectedPath><affectedPath>clubb_jax/tests/test_kk_rico_oracle.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_numerical_check_setters.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_bugsrad.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_new_tsdadg.py</affectedPath><affectedPath>clubb_python_api/tests/test_init_sequence.py</affectedPath><affectedPath>clubb_jax/tests/test_fill_holes_mean.py</affectedPath><affectedPath>clubb_jax/tests/test_sfc_varnce.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_time_select.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_turbulent_adv_pdf.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_bicgstab_solvers.py</affectedPath><affectedPath>clubb_jax/tests/test_remapping_module.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_gfdl_activation.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_w_up_in_cloud.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_meta.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_cloud_drop_sed.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_sliding_window.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_error_code.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_gabls3_night_stability.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_driver_error_checks.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_interpolation.py</affectedPath><affectedPath>clubb_jax/tests/test_fill_holes_global.py</affectedPath><affectedPath>clubb_jax/tests/test_silhs_sampling.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_spurious_source.py</affectedPath><affectedPath>clubb_jax/tests/test_kk_covariance_batch.py</affectedPath><affectedPath>clubb_jax/tests/microphysics_coefficients.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pressure_sounding_z.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_vs_MM.py</affectedPath><affectedPath>clubb_jax/tests/test_pvertinterp.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_pdf_closure_driver.py</affectedPath><affectedPath>clubb_jax/tests/test_numerical_check_setters.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_global.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_saturation.py</affectedPath><affectedPath>dash_app/pytests/test_agent_services.py</affectedPath><affectedPath>clubb_jax/tests/test_clip_skewness.py</affectedPath><affectedPath>AGENTS.md</affectedPath><affectedPath>clubb_python_api/tests/test_udt_roundtrip.py</affectedPath><affectedPath>clubb_jax/tests/test_error_code.py</affectedPath><affectedPath>clubb_jax/tests/test_routine_placement.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_const_limits.py</affectedPath><affectedPath>clubb_jax/tests/test_xpyp_term_ta_godunov.py</affectedPath><affectedPath>clubb_jax/tests/test_f2py_advance_xm_wpxp.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_binormal_moments.py</affectedPath><affectedPath>clubb_jax/tests/test_trivar_NLL_mean_eq.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_xpyp_term_ta_pdf.py</affectedPath><affectedPath>clubb_jax/tests/test_cos_solar_zen.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_diffusion.py</affectedPath><affectedPath>clubb_jax/tests/test_nov11.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_init_pressure.py</affectedPath><affectedPath>clubb_jax/tests/test_setter_var_params.py</affectedPath><affectedPath>clubb_python_api/tests/test_argument_contract_audit.py</affectedPath><affectedPath>clubb_jax/tests/test_xm_correction_wpxp_cl.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_routine_placement.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_runtime_info.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calendar.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_read_surface_var_for_bc.py</affectedPath><affectedPath>clubb_jax/pytests/microphysics_test_inputs.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_windm_edsclrm.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_error_paths.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_mean_adv.py</affectedPath><affectedPath>utilities/pytests/auto_llm_generated_pytests/README.md</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_port_structure.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_comp_corrs_binormal.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_cholesky_factor.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_autodiff.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_advance_helper_extras.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_radiation_module.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_core.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_file_functions.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_trivar_NLL_mean_eq.py</affectedPath><affectedPath>clubb_jax/tests/run_rico_microphysics_oracle_test.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_interpolation.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_new_hybrid_pdf_main.py</affectedPath><affectedPath>clubb_jax/tests/test_compute_uv_tndcy.py</affectedPath><affectedPath>clubb_jax/tests/test_diagnose_correlations.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_correlations.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_radiation_port_structure.py</affectedPath><affectedPath>clubb_jax/tests/test_KK_Nrm_tendencies.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_xprcp_component.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_transport.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_pos_definite_module.py</affectedPath><affectedPath>clubb_python_api/pytests/test_stats_registry.in</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_clip_variance.py</affectedPath><affectedPath>clubb_jax/tests/test_solver.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_penta_lu_solvers.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pressure_coord_forcing.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_rad_extended_atmosphere.py</affectedPath><affectedPath>clubb_jax/tests/test_microphysics_error_paths.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_max_cubic_root.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_remap.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_KK_Nrm_tendencies.py</affectedPath><affectedPath>clubb_jax/pytests/port_structure_helpers.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_stats.py</affectedPath><affectedPath>clubb_python_api/tests/test_udt_return_contract.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_denorm_transform_corr.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_meta.py</affectedPath><affectedPath>clubb_jax/tests/test_diffusion.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_xp2_xpyp.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_xp2_xpyp_terms.py</affectedPath><affectedPath>clubb_jax/tests/test_liq_water_path.py</affectedPath><affectedPath>clubb_jax/tests/test_compute_gamma_skw.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_T_in_K.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_corr_w_hm_n.py</affectedPath><affectedPath>clubb_jax/tests/test_compute_xp3.py</affectedPath><affectedPath>clubb_jax/tests/test_update_xp2_mc.py</affectedPath><affectedPath>clubb_jax/tests/test_trivar_NNL_covar_eq.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_upxp.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_rcm_sat_adj.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_advance_core_subs.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_mixed_moment_pdf_integrals.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_hydrometp2_zt.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_roots.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_unsupported_config_guards.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_t_in_k_module.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_wp3_on_wp2.py</affectedPath><affectedPath>experimental/experimental_pdfs/README.md</affectedPath><affectedPath>clubb_jax/tests/test_spurious_source.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_luhar.py</affectedPath><affectedPath>clubb_jax/tests/test_corr_varnce.py</affectedPath><affectedPath>clubb_jax/tests/test_bivar_LL_covar_partial.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_diagnostic_cache.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_calc_roots.py</affectedPath><affectedPath>clubb_jax/tests/test_cloud_drop_sed.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_new_pdf.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_skx.py</affectedPath><affectedPath>clubb_jax/tests/test_xm_wpxp_terms.py</affectedPath><affectedPath>clubb_jax/tests/test_soil_vegetation.py</affectedPath><affectedPath>clubb_jax/tests/test_bivar_LL_mean_const.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_gamma_skw.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_grid_operators.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_host_errors.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_new_hybrid_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calculate_thvm.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_sampling.py</affectedPath><affectedPath>clubb_jax/tests/test_remapping_ppm.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_skx.py</affectedPath><affectedPath>clubb_jax/tests/test_new_pdf_main.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_remapping_module.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_mono_flux.py</affectedPath><affectedPath>tests/pytests/jax_comparison_inputs.py</affectedPath><affectedPath>clubb_jax/tests/test_w_up_in_cloud.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_cobra_sfclyr.py</affectedPath><affectedPath>clubb_jax/tests/test_simple_rad_lba.py</affectedPath><affectedPath>clubb_jax/tests/test_index_mapping.py</affectedPath><affectedPath>clubb_jax/tests/test_cloud_correlate.py</affectedPath><affectedPath>clubb_jax/tests/test_cholesky_factor.py</affectedPath><affectedPath>clubb_jax/tests/test_clip_covar.py</affectedPath><affectedPath>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_mixed_moment_allocation.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_wp2_wp3.py</affectedPath><affectedPath>clubb_jax/tests/test_time_select.py</affectedPath><affectedPath>clubb_jax/tests/test_silhs_fortran_oracle.py</affectedPath><affectedPath>clubb_jax/tests/test_pdf_params_pack_roundtrip.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_calc_roots.py</affectedPath><affectedPath>clubb_python_api/README.md</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_new_pdf_main.py</affectedPath><affectedPath>clubb_jax/tests/test_responder_params.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_cos_solar_zen.py</affectedPath><affectedPath>tests/README.md</affectedPath><affectedPath>clubb_jax/tests/test_rad_extended_atmosphere.py</affectedPath><affectedPath>clubb_jax/tests/test_diagnostic_cache.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_pos_definite_module.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_index_mapping.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_windm_edsclrm.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_xpthvp_terms.py</affectedPath><affectedPath>clubb_jax/tests/test_set_sfc_value_of_flux_profiles.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_mixing_length.py</affectedPath><affectedPath>clubb_python_api/tests/conftest.py</affectedPath><affectedPath>jenkins_tests/clubb_dash/Jenkinsfile</affectedPath><affectedPath>clubb_jax/tests/test_wp2_wp3_lhs_terms.py</affectedPath><affectedPath>clubb_jax/tests/run_jax_timestep_gradient_test.py</affectedPath><affectedPath>clubb_python_api/tests/test_init_pressure.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_transform_pdf_chi_eta_component.py</affectedPath><affectedPath>clubb_jax/tests/test_cholesky_corr_mtx_approx.py</affectedPath><affectedPath>clubb_jax/tests/test_sfc_flux.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_wp2_wp3_lhs_terms.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_corr_varnce_module.py</affectedPath><affectedPath>clubb_jax/tests/test_saturation.py</affectedPath><affectedPath>clubb_jax/tests/test_jax_cli_options.py</affectedPath><affectedPath>clubb_jax/tests/test_runtime_info.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_splatting_autodiff.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_component_precip_frac_specify.py</affectedPath><affectedPath>clubb_jax/tests/test_lba_sfclyr.py</affectedPath><affectedPath>clubb_jax/tests/test_precip_fraction.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_validation_checks.py</affectedPath><affectedPath>clubb_jax/tests/run_silhs_driver_test.py</affectedPath><affectedPath>clubb_jax/tests/test_adg2_driver.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_splat.py</affectedPath><affectedPath>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_transport_2g_prototype.py</affectedPath><affectedPath>dash_app/README.md</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_matrix_operations.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_moment_integrals.py</affectedPath><affectedPath>clubb_jax/tests/test_coefs_semiimpl.py</affectedPath><affectedPath>clubb_python_api/run_pytests.sh</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_lba_sfclyr.py</affectedPath><affectedPath>clubb_jax/tests/test_radiation_module.py</affectedPath><affectedPath>clubb_jax/tests/test_max_cubic_root.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_wpxpyp_pdf.py</affectedPath><affectedPath>clubb_jax/tests/test_validation_checks.py</affectedPath><affectedPath>clubb_jax/tests/test_skx_func.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_new_pdf.py</affectedPath><affectedPath>clubb_jax/tests/test_fill_holes_sliding_window.py</affectedPath><affectedPath>LLM_prompts/SHORTCUTS.md</affectedPath><affectedPath>LLM_prompts/pytest_workflow.md</affectedPath><affectedPath>clubb_jax/tests/test_calc_pdf_chi_mean_var.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_file_functions.py</affectedPath><affectedPath>clubb_jax/tests/test_binormal_moments.py</affectedPath><affectedPath>clubb_jax/tests/test_hydrostatic.py</affectedPath><affectedPath>clubb_jax/tests/test_denorm_transform_corr.py</affectedPath><affectedPath>LLM_prompts/update_python_api_and_drivers.md</affectedPath><affectedPath>clubb_jax/tests/test_new_hybrid_pdf_main.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_ly93.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_close_luhar_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_saturation.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_comp_corrs_binormal.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_coefs_semiimpl.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_xprcp_component.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_xpthvp_terms.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_advance_xp3_simplified.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_utils.py</affectedPath><affectedPath>clubb_jax/tests/test_no_dead_functions.py</affectedPath><affectedPath>clubb_jax/tests/test_pdf_params_init.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_component_corr_ip.py</affectedPath><affectedPath>tests/pytests/test_bindiff_report.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_binormal_moments.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_sunray_sw.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_jit_compile.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_pdf_closure.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_remapping_ppm.py</affectedPath><affectedPath>clubb_jax/tests/test_transform_pdf_chi_eta_component.py</affectedPath><affectedPath>tuner/pytests/auto_llm_generated_pytests/README.md</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_wp2_wp3.py</affectedPath><affectedPath>clubb_jax/tests/test_silhs_diagnostics.py</affectedPath><affectedPath>clubb_jax/tests/test_unsupported_config_guards.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pvertinterp.py</affectedPath><affectedPath>clubb_jax/tests/test_full_timestep_grad.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_no_dead_functions.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_pdf_utils.py</affectedPath><affectedPath>clubb_jax/tests/test_microphysics_integration.py</affectedPath><affectedPath>clubb_jax/tests/test_cobra_sfclyr.py</affectedPath><affectedPath>clubb_python_api/tests/test_string_conversion.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_mpace_b_lba_tndcy.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_penta_faithful.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_stats_accumulate.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_precipitation_fraction.py</affectedPath><affectedPath>LLM_prompts/session_retrospective.md</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_diagnostics.py</affectedPath><affectedPath>clubb_jax/tests/test_kk_upscaled_variances.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_ly93.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_lapack_interfaces.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_sponge_damp_xp23.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_nc_ncn_eqns.py</affectedPath><affectedPath>LLM_prompts/README.md</affectedPath><affectedPath>clubb_jax/tests/test_silhs_surface_schemes.py</affectedPath><affectedPath>clubb_jax/tests/test_luhar_params.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_roots.py</affectedPath><affectedPath>clubb_jax/tests/test_clip_variance.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.py</affectedPath><affectedPath>clubb_jax/tests/test_microphysics_host_errors.py</affectedPath><affectedPath>clubb_jax/tests/test_NNL_covar_const_vs_MM.py</affectedPath><affectedPath>clubb_python_api/requirements.txt</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_precipitation_fraction.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mono_flux.py</affectedPath><affectedPath>clubb_jax/tests/test_component_corr_ip.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_index_mapping.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_wpxpyp_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_fortran_oracle.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_luhar_3d_driver.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_penta_lu_solvers.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_core.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_morrison_special.py</affectedPath><affectedPath>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_pdf9_parcel_ensemble_report.py</affectedPath><affectedPath>clubb_jax/tests/test_inverse_hydrostatic.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_new_hybrid_pdf.py</affectedPath><affectedPath>clubb_jax/tests/test_no_dead_imports.py</affectedPath><affectedPath>clubb_python_api/pytests/conftest.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_w_hm_n.py</affectedPath><affectedPath>clubb_jax/tests/test_NNL_covar_const_limits.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_xm_wpxp_terms.py</affectedPath><affectedPath>clubb_jax/tests/test_morrison_special.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_precip_fraction.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_spec_hum_to_mixing_ratio.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_penta_solver.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_saturation.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_cloud_correlate.py</affectedPath><affectedPath>clubb_jax/tests/test_new_pdf.py</affectedPath><affectedPath>clubb_jax/tests/test_jit_compile.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_windm_edsclrm_lhs.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_sfc_flux.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_advance_xm_wpxp.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_quadrivar_covar_const_limits.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_clip_covar.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_skx_func.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_wp2_wp3_terms.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_nov11.py</affectedPath><affectedPath>clubb_jax/tests/test_Nc_Ncn_eqns.py</affectedPath><affectedPath>clubb_jax/tests/test_sunray_sw.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_mean_const.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_matrix_operations.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_hydrometeor_mixed_moments.py</affectedPath><affectedPath>dash_app/pytests/test_equations.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_solver.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pos_definite.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_ly93_pdf.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_sponge.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_hydrostatic.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_ice_cloud_frac_component.py</affectedPath><affectedPath>clubb_jax/tests/test_advance_helper_extras.py</affectedPath><affectedPath>clubb_jax/tests/test_calc_corr_norm_cholesky.py</affectedPath><affectedPath>clubb_jax/tests/test_windm_edsclrm_lhs.py</affectedPath><affectedPath>clubb_jax/tests/test_limits_f_x_responder.py</affectedPath><affectedPath>clubb_jax/tests/test_numerics_autodiff.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_index_mapping.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_xm_correction_wpxp_cl.py</affectedPath><affectedPath>clubb_jax/tests/test_mpace_b_lba_tndcy.py</affectedPath><affectedPath>tests/run_pytests.sh</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_utilities.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_cholesky_corr_mtx_approx.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_mean.py</affectedPath><affectedPath>clubb_jax/tests/test_param_names.py</affectedPath><affectedPath>clubb_jax/tests/test_stats_writer.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_xp3.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_numerics_autodiff.py</affectedPath><affectedPath>clubb_jax/tests/test_compute_sigma_sqd_w.py</affectedPath><affectedPath>tests/pytests/auto_llm_generated_pytests/README.md</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_bicgstab_solvers.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_adg2_driver.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_new_pdf.py</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_diagnose_correlations_module.py</affectedPath><affectedPath>clubb_jax/src/Microphys/KK_microphys/KK_upscaled_turbulent_sed.py</affectedPath><affectedPath>clubb_jax/pytests/microphysics_coefficients.py</affectedPath><affectedPath>clubb_jax/tests/test_bugsrad.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_responder_params.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_corr_varnce.py</affectedPath><affectedPath>clubb_jax/tests/test_ice_dfsn.py</affectedPath><affectedPath>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_turbulent_adv_pdf.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_set_sfc_value_of_flux_profiles.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_norm_cholesky.py</affectedPath><affectedPath>clubb_jax/SILHS_PORT_NOTES.md</affectedPath><affectedPath>clubb_python_api/tests/test_call_tree_new_tsdadg.py</affectedPath><affectedPath>clubb_jax/tests/test_comp_corr_norm.py</affectedPath><affectedPath>clubb_jax/tests/test_pdf_binormal_moments.py</affectedPath><affectedPath>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_integrals_all_mm.py</affectedPath><affectedPath>tests/pytests/auto_llm_generated_pytests/test_jax_silhs_forwarding.py</affectedPath><affectedPath>clubb_jax/tests/test_gfdl_activation.py</affectedPath><affectedPath>clubb_jax/tests/test_compute_rtp2_from_chi.py</affectedPath><commitId>9afedd80dbc4a1f64989768f1f5124eb03483513</commitId><timestamp>1791171294000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Organize pytest admission, ownership and Jenkins coverage (#1377)

* Organize pytest coverage, generated admission and Jenkins ownership

* Tidy moved pytest helper formatting

* Isolate native JAX pytest failures and fix migration validation

* Prepare Dash CI Node runtime without system npm

* Prune incidental UI assertions and clarify required-input failures

* Keep pytest promotion paths stable and validate API fixtures

* Apply pytest review revisions and consolidate JAX CI

* Keep pytest discovery and admission in the runners

* Limit Jenkins additions to focused pytest stages

* Keep component-specific validation beside Dash and JAX
</comment><date>2026-10-04 22:34:54 -0500</date><id>9afedd80dbc4a1f64989768f1f5124eb03483513</id><msg>Organize pytest admission, ownership and Jenkins coverage (#1377)</msg><path><editType>delete</editType><file>clubb_jax/tests/test_coefs_semiimpl.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_grid_operators.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_param_names.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_luhar_params.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_corr_varnce_module.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_corr_varnce.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_file_functions.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_mono_flux.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_no_dead_imports.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_utilities.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_ly93.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_fill_holes_mean.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_lba_sfclyr.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_rcm_sat_adj.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_wp2_wp3_lhs_terms.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_pdf_chi_mean_var.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_transport.py</file></path><path><editType>add</editType><file>utilities/pytests/auto_llm_generated_pytests/README.md</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_Nc_Ncn_eqns.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_lba_sfclyr.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_upxp.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pvertinterp.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_unsupported_config_guards.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_NNL_covar_vs_MM.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_grid_operators.py</file></path><path><editType>add</editType><file>clubb_jax/tests/run_silhs_driver_test.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_max_cubic_root.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_params_pack_roundtrip.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_pdf_utils.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_transport.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_comp_corr_norm.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_T_in_K.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_new_pdf_main.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_remap.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_mono_flux_limiter.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_saturation.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_mixed_moment_pdf_integrals.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pos_definite.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_pdf_closure_driver.py</file></path><path><editType>add</editType><file>tuner/pytests/auto_llm_generated_pytests/README.md</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_mirror_lower_triangular.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_udt_return_contract.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_new_pdf.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pdf_integrals_all_mm.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calculate_w_responder_params.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_silhs_surface_schemes.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_quadrivar_NNLL_covar_eq_swap.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_matrix_solver_wrapper.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_new_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_update_xp2_mc.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_cholesky_corr_mtx_approx.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_compute_sigma_sqd_w.py</file></path><path><editType>add</editType><file>tests/pytests/jax_comparison_inputs.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_cholesky_factor.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_differentiability.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_splatting_autodiff.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_ice_cloud_frac_component.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_comp_corr_norm.py</file></path><path><editType>add</editType><file>clubb_jax/tests/run_rico_microphysics_oracle_test.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_new_pdf_main.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_wpxpyp_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_xprcp_component.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pressure_sounding_z.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_xpthvp_terms.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_setter_var_params.py</file></path><path><editType>delete</editType><file>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_pdf9_parcel_ensemble_report.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_gabls3_night_stability.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_tridiag_lu_solvers.py</file></path><path><editType>edit</editType><file>dash_app/README.md</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_roots.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_no_dead_functions.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_skx.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_validation_checks.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_pos_definite_module.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/microphysics_coefficients.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_udt_return_contract.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_sunray_sw.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_t_in_k_module.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_numerics_autodiff.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/conftest.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_trivar_NLL_mean_eq.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pressure_coord_forcing.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_numerical_check.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_liq_water_path.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_error_code.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_turbulent_adv_pdf.py</file></path><path><editType>edit</editType><file>dash_app/pytests/test_tutorial_tab.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_precipitation_fraction.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_pdf_utils.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_bicgstab_solvers.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_utils.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_argument_contract_audit.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_turbulent_adv_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_setter_var_params.py</file></path><path><editType>delete</editType><file>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_transport_2g_prototype.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_advance_xp3_simplified.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_sponge_damp_xp23.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_cloud_feedback_sfclyr.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_hydrostatic.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_advance_xp3.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_fortran_oracle.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_new_hybrid_pdf_main.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_forcing_port_structure.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_pdf_closure.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_T_in_K.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_runtime_info.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_smooth_heaviside.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_cloud_drop_sed.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_mixing_length.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_spurious_source.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pdf_binormal_moments.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_sfc_varnce.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_corr_w_hm_n.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_hydrometp2_zt.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_xpthvp_terms.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_sponge_damp_xp23.py</file></path><path><editType>add</editType><file>.agents/skills/clubb-pytests/SKILL.md</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_saturation.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_mirror_lower_triangular.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_driver.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_luhar_3d_driver.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_w_up_in_cloud.py</file></path><path><editType>edit</editType><file>clubb_python_api/requirements.txt</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_quadrivar_covar_const_limits.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pdf_params_init.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_cobra_sfclyr.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_xm_wpxp_terms.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_comp_mu_sigma_hm.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_compute_uv_tndcy.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_tridiag_lu_solvers.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_spec_hum_to_mixing_ratio.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_python_port_api_coverage.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pvertinterp.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_close_luhar_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_correlations.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_kk_autoconversion.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_remap.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_precip_fraction.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_interpolation.py</file></path><path><editType>add</editType><file>jenkins_tests/clubb_dash/Jenkinsfile</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_port_structure.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_mixing_length.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_bivar_LL_covar_partial_rr_Nr.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_new_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_vs_MM.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_radiation_port_structure.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_luhar_params.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_radiation_port_structure.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_binormal_moments.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_penta_lu_solvers.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/port_structure_helpers.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_xprcp_component.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_stats_writer.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_advance_xm_wpxp.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_numerical_check_setters.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_config_flags_complete.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_driver_error_checks.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_remapping_ppm.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_gfdl_activation.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_jax/Jenkinsfile</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_radiation_module.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_file_functions.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_new_tsdadg_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_inverse_hydrostatic.py</file></path><path><editType>edit</editType><file>LLM_prompts/update_python_api_and_drivers.md</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_xpyp_term_ta_godunov.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_numerical_check_setters.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_roots.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_compute_xp3.py</file></path><path><editType>edit</editType><file>clubb_jax/README.md</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_ice_dfsn.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_liquid_cloud_frac_component.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_surface_schemes.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_calc_roots.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_advance_core.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_remapping_ppm.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_time_select.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_diagnostic_cache.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_error_paths.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_component_corr_ip.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_read_surface_var_for_bc.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_read_surface_var_for_bc.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_bivar_LL_mean_const.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_nov11.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_new_tsdadg.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_mpace_b_lba_tndcy.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_skx.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_corr_norm_cholesky.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_cobra_sfclyr.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_denorm_transform_corr.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_sfc_varnce.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_lapack_wrap.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_mean_vert_vel_up_down.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_index_mapping.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_rad_extended_atmosphere.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_penta_solver.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_stats.py</file></path><path><editType>delete</editType><file>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_mixed_moment_allocation.py</file></path><path><editType>edit</editType><file>LLM_prompts/README.md</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_cloud_drop_sed.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_limits_f_x_responder.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_inverse_hydrostatic.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_liquid_cloud_frac_component.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_bicgstab_solvers.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_wp3_on_wp2.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_xp3.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_diagnose_correlations.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_mpace_b_lba_tndcy.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_silhs_sampling.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_sliding_window.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pressure_sounding_z.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_trivar_NLL_mean_eq.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_bivar_NL_mean_eq.py</file></path><path><editType>edit</editType><file>tests/pytests/test_bindiff_report.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_ice_dfsn.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_wpxpyp_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_xm_correction_wpxp_cl.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_norm_cholesky.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_cloud_correlate.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_mean_adv.py</file></path><path><editType>edit</editType><file>tests/README.md</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_xm_wpxp_terms.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_integrals_all_mm.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pressure_coord_forcing.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_sfc_flux.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_full_timestep_grad.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_xm_wpxp.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_pos_definite_module.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_advance_wp2_wp3.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pos_definite.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_init_pressure.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_microphysics_host_errors.py</file></path><path><editType>add</editType><file>.agents/skills/clubb-session-retrospective/SKILL.md</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_microphysics_integration.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_sfc_varnce.py</file></path><path><editType>edit</editType><file>clubb_jax/SILHS_PORT_NOTES.md</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_spec_hum_to_mixing_ratio.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_init_pressure.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_adg1_adg2_responder_params.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_nov11.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_xpyp_term_ta_pdf.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_udt_roundtrip.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_fill_holes_sliding_window.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_sunray_sw.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_uv_tndcy.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_moment_integrals.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_new_tsdadg.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_quadrivar_covar_const_limits.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_xpyp_term_ta_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_trivar_NNL_covar_eq.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_liq_water_path.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_compute_rtp2_from_chi.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_port_structure.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_autodiff.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_diffusion.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_fill_holes_global.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_precip_fraction.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_radiation_module.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/microphysics_test_inputs.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calculate_thvm.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_utils.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_splat.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_gfdl_activation.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_ice_cloud_frac_component.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_splatting_autodiff.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_w_hm_n.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_params_init.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_mean_vert_vel_up_down.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_xp2_xpyp_terms.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_covar_KK_mixt_frac_linearity.py</file></path><path><editType>edit</editType><file>LLM_prompts/SHORTCUTS.md</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_morrison_special.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_adg2_driver.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_new_hybrid_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_constants.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_component_corr_ip.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_routine_placement.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_advance_helper_extras.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_rtp2_from_chi.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/conftest.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_covar_KK_mixt_frac_linearity.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_transform_pdf_chi_eta_component.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_wp2_wp3.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_penta_faithful.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_wp3_on_wp2.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_stats.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_penta_faithful.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_meta.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_integration.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_responder_params.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_mean_adv.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pdf_moment_integrals.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_interpolation.py</file></path><path><editType>add</editType><file>LLM_prompts/session_retrospective.md</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_differentiability.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_luhar_3d_driver.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_spurious_source.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_unsupported_config_guards.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_splat.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_KK_Nrm_tendencies.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pdf_params_pack_roundtrip.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_w_up_in_cloud.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_time_select.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_trivar_NNL_covar_eq.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_forcing_port_structure.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_string_conversion.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_advance_xp3_simplified.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad_lba.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_rad_extended_atmosphere.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_t_in_k_module.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_advance_helper_extras.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial_rr_Nr.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_hydromet_pdf_parameter.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_update_xp2_mc.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_interpolation.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_index_mapping.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_smooth_heaviside.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_advance_windm_edsclrm.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/microphysics_coefficients.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_skx_func.py</file></path><path><editType>edit</editType><file>dash_app/pytests/test_analysis.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_const_vs_MM.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mono_flux.py</file></path><path><editType>edit</editType><file>clubb_python_api/run_pytests.sh</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_jit_compile.py</file></path><path><editType>edit</editType><file>clubb_jax/src/Microphys/KK_microphys/KK_upscaled_turbulent_sed.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_stats_accumulate.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_index_mapping.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_cholesky_factor.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_corr_varnce_module.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_microphysics_port_structure.py</file></path><path><editType>edit</editType><file>dash_app/pytests/test_agent_services.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_sfc_flux.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_comp_mu_sigma_hm.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_penta_solver.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_init_sequence.py</file></path><path><editType>edit</editType><file>dash_app/pytests/test_dashboard_manager.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_kk_rico_oracle.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_saturation.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_binormal_moments.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_pdf_binormal_moments.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_advance_core_subs.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_core.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_wp2_wp3_terms.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_component_precip_frac_specify.py</file></path><path><editType>edit</editType><file>tests/run_pytests.sh</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_diagnose_upxp.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_mixed_moment_pdf_integrals.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_xpyp_term_ta_godunov.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_lapack_interfaces.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_meta.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_wp4_pdf.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_string_conversion.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_skx_func.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_morrison_special.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_wp4_pdf.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_cholesky_corr_mtx_approx.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_numerical_check.py</file></path><path><editType>edit</editType><file>clubb_jax/AGENTS.md</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_ly93_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_bugsrad.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_solver.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_precipitation_fraction.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calculate_w_responder_params.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_new_pdf.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_no_dead_imports.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_remapping_module.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_windm_edsclrm_lhs.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_index_mapping.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_pdf_closure.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_close_luhar_pdf.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_kk_local_means.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_diagnostics.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_hydrometeor_mixed_moments.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_penta_lu_solvers.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_saturation.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_mixing_length.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_cloud_feedback_sfclyr.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_adg1_adg2_responder_params.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_hydrostatic.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_luhar.py</file></path><path><editType>add</editType><file>LLM_prompts/pytest_workflow.md</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_calc_roots.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_responder_params.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_comp_corrs_binormal.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_python_port_api_coverage.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calculate_thvm.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_coefs_semiimpl.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_sponge.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_gamma_skw.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_sigma_sqd_w.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_nc_ncn_eqns.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_bivar_NL_mean_eq.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_matrix_operations.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calendar.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_kk_upscaled_variances.py</file></path><path><editType>edit</editType><file>experimental/experimental_pdfs/README.md</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_matrix_operations.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_diagnose_correlations_module.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_KK_Nrm_tendencies.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_stats_output_time.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_clip_skewness.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_component_precip_frac_specify.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_new_tsdadg_pdf.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_pdf_utilities.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_new_hybrid_pdf_main.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_simple_rad_lba.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_jit_compile.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_ly93_pdf.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_kk_covariance_batch.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_lapack_wrap.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_global.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_microphysics_error_paths.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_NNL_covar_const_limits.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_fill_holes_autodiff.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_Nc_Ncn_eqns.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_no_dead_functions.py</file></path><path><editType>add</editType><file>dash_app/tests/run_dash_mixing_length_test.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_error_code.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_sfc_varnce.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_bugsrad.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_advance_core_subs.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_config_flags_complete.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_clip_covar.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_cos_solar_zen.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_numerics_autodiff.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_clip_variance.py</file></path><path><editType>add</editType><file>dash_app/pytests/auto_llm_generated_pytests/README.md</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_diagnostic_cache.py</file></path><path><editType>edit</editType><file>dash_app/pytests/test_equations.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_mono_flux_limiter.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_nc_ncn_eqns.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_new_hybrid_pdf.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_udt_roundtrip.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_hydrometp2_zt.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_silhs_port_structure.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_limits_f_x_responder.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_NNL_covar_const_vs_MM.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_silhs_diagnostics.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_const_limits.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_windm_edsclrm_lhs.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_windm_edsclrm.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_stats_accumulate.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_stats_registry.in</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_wp2_wp3_lhs_terms.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_pdf_closure_driver.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calendar.py</file></path><path><editType>delete</editType><file>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_vertical_coherence.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_clip_covar.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_silhs_sampling.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_error_code.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_stats_output_time.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/microphysics_test_inputs.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_kk_local_means.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_remapping_module.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_lapack_interfaces.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_solver.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_transform_pdf_chi_eta_component.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_standalone_jax.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_param_names.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_ly93.py</file></path><path><editType>add</editType><file>tests/pytests/auto_llm_generated_pytests/test_jax_silhs_forwarding.py</file></path><path><editType>edit</editType><file>clubb_python_api/README.md</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_luhar.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_calc_pdf_skewness_diagnostics.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_mean.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_validation_checks.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_host_errors.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_set_sfc_value_of_flux_profiles.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_advance_xp2_xpyp.py</file></path><path><editType>add</editType><file>tests/pytests/auto_llm_generated_pytests/README.md</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_quadrivar_NNLL_covar_eq_swap.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_gabls3_night_stability.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_jax_cli_options.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_mean_const.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_clip_skewness.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_denorm_transform_corr.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_clip_variance.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_standalone_jax.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_xp2_xpyp_terms.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_diagnose_correlations_module.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_max_cubic_root.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_compute_gamma_skw.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_compute_xp3.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_python/Jenkinsfile</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_kk_autoconversion.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_rcm_sat_adj.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_hydromet_pdf_parameter.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_runtime_info.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_cos_solar_zen.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_constants.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_matrix_solver_wrapper.py</file></path><path><editType>delete</editType><file>experimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_refresh_pdf9_parcel_ensemble_lab.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_silhs_driver.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_f2py_advance_xm_wpxp.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_corr_varnce.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_bivar_LL_covar_partial.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_routine_placement.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_windm_edsclrm_rhs.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_diffusion.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_calc_comp_corrs_binormal.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_wp2_wp3_terms.py</file></path><path><editType>add</editType><file>clubb_jax/tests/run_jax_timestep_gradient_test.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_xm_correction_wpxp_cl.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_cloud_correlate.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_hydrometeor_mixed_moments.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_silhs_fortran_oracle.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_set_sfc_value_of_flux_profiles.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_sponge.py</file></path><path><editType>delete</editType><file>clubb_python_api/tests/test_call_tree_advance_xp2_xpyp.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_stats_writer.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_interpolation.py</file></path><path><editType>edit</editType><file>AGENTS.md</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_soil_vegetation.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_kk_covariance_batch.py</file></path><path><editType>add</editType><file>clubb_jax/pytests/auto_llm_generated_pytests/test_kk_upscaled_variances.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_simple_rad.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_adg2_driver.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_soil_vegetation.py</file></path><path><editType>delete</editType><file>clubb_jax/tests/test_windm_edsclrm_rhs.py</file></path><path><editType>add</editType><file>clubb_python_api/pytests/test_stats_registry.in</file></path><path><editType>edit</editType><file>tests/pytests/test_jax_compare_forwarding.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/stats_json_to_namelist.py</affectedPath><affectedPath>input/stats/README</affectedPath><affectedPath>dash_app/run_tab/tab.py</affectedPath><affectedPath>dash_app/shared/stats.py</affectedPath><affectedPath>.gitignore</affectedPath><affectedPath>dash_app/persistence.py</affectedPath><affectedPath>dash_app/run_tab/runtime.py</affectedPath><affectedPath>input/stats/stats.json</affectedPath><affectedPath>dash_app/run_tab/callbacks_selection.py</affectedPath><affectedPath>dash_app/run_tab/stats.py</affectedPath><affectedPath>dash_app/run_tab/layout.py</affectedPath><affectedPath>dash_app/README.md</affectedPath><affectedPath>dash_app/services/models.py</affectedPath><affectedPath>dash_app/assets/33_stats_tree.js</affectedPath><affectedPath>dash_app/shared/actions.py</affectedPath><affectedPath>dash_app/run_tab/discovery.py</affectedPath><affectedPath>dash_app/pytests/test_stats_selection.py</affectedPath><affectedPath>dash_app/DEVELOPMENT.md</affectedPath><affectedPath>utilities/pytests/test_stats_json_to_namelist.py</affectedPath><affectedPath>dash_app/assets/11_tab_run_theme.css</affectedPath><affectedPath>utilities/create_case_namelist.py</affectedPath><affectedPath>dash_app/pytests/test_persistence.py</affectedPath><commitId>feb2438c46510eaadecd3e0c3bdede3df2939ac1</commitId><timestamp>1791171498000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add hierarchical JSON statistics selection and Dash editor (#1378)

* Add hierarchical JSON stats selection and Dash editor

* Ignore locally saved custom stats configurations
</comment><date>2026-10-04 22:38:18 -0500</date><id>feb2438c46510eaadecd3e0c3bdede3df2939ac1</id><msg>Add hierarchical JSON statistics selection and Dash editor (#1378)</msg><path><editType>edit</editType><file>dash_app/run_tab/tab.py</file></path><path><editType>edit</editType><file>dash_app/shared/actions.py</file></path><path><editType>add</editType><file>utilities/stats_json_to_namelist.py</file></path><path><editType>edit</editType><file>dash_app/README.md</file></path><path><editType>edit</editType><file>dash_app/pytests/test_persistence.py</file></path><path><editType>edit</editType><file>dash_app/run_tab/discovery.py</file></path><path><editType>edit</editType><file>dash_app/run_tab/callbacks_selection.py</file></path><path><editType>add</editType><file>input/stats/stats.json</file></path><path><editType>add</editType><file>dash_app/run_tab/stats.py</file></path><path><editType>edit</editType><file>dash_app/run_tab/layout.py</file></path><path><editType>add</editType><file>dash_app/shared/stats.py</file></path><path><editType>edit</editType><file>utilities/create_case_namelist.py</file></path><path><editType>edit</editType><file>dash_app/run_tab/runtime.py</file></path><path><editType>edit</editType><file>dash_app/services/models.py</file></path><path><editType>add</editType><file>dash_app/pytests/test_stats_selection.py</file></path><path><editType>add</editType><file>dash_app/assets/33_stats_tree.js</file></path><path><editType>edit</editType><file>.gitignore</file></path><path><editType>add</editType><file>utilities/pytests/test_stats_json_to_namelist.py</file></path><path><editType>edit</editType><file>dash_app/assets/11_tab_run_theme.css</file></path><path><editType>edit</editType><file>input/stats/README</file></path><path><editType>edit</editType><file>dash_app/DEVELOPMENT.md</file></path><path><editType>edit</editType><file>dash_app/persistence.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>675</number><url>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/675/</url></nextBuild><previousBuild><number>673</number><url>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/673/</url></previousBuild></nextBuild><previousBuild><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>672</buildNumber><marked><SHA1>ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3</SHA1><branch><SHA1>ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3</SHA1><branch><SHA1>ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3</SHA1><branch><SHA1>ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#672</displayName><duration>632896</duration><estimatedDuration>446212</estimatedDuration><fullDisplayName>clubb_BFB_gfortran_test #672</fullDisplayName><id>672</id><keepLog>false</keepLog><number>672</number><queueId>9558</queueId><result>SUCCESS</result><timestamp>1791016148146</timestamp><url>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/672/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_clubb_w_varying_flags.py</affectedPath><affectedPath>jenkins_tests/clubb_restart_silhs_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_python/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_plot_ifort_debug/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_timestep/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_tuner/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_G_unit_gfortran_tests/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/github_nightly_update_scripts/Jenkinsfile</affectedPath><affectedPath>run_scripts/README.md</affectedPath><affectedPath>jenkins_tests/clubb_timestep_convergence_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_single_prec_build/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_openmp_gfortran_test/Jenkinsfile</affectedPath><affectedPath>utilities/create_case_namelist.py</affectedPath><affectedPath>utilities/pytests/test_create_case_namelist.py</affectedPath><affectedPath>jenkins_tests/clubb_backwards_compatibility_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_gfortran_debug_run/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_plots/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_debug_build/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_column_mirror/Jenkinsfile</affectedPath><affectedPath>src/generalized_grid_test.F90</affectedPath><affectedPath>jenkins_tests/clubb_generalized_grid/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_stats_output_consistency/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/LLM_FAILURE_AUTOMATION_DESIGN.md</affectedPath><affectedPath>jenkins_tests/clubb_ifort_build/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_BFB_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_BFB_varying_flags_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_python_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_jax/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_single_prec_build/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfile</affectedPath><affectedPath>postprocessing/pyplotgen/pyplotgen.py</affectedPath><affectedPath>jenkins_tests/clubb_mac_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_plot_solver_compare/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_driver/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_cmake_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_openmp/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_new_tuner_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_column_mirror_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_release_intel_build/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_rev_grid_matrix_solve_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_BFB_e3sm_flags_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_fire_tuning_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_cmake/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_driver_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_gpu_async_output_matching/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_gfortran_build/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_basic_full_run/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_jax_tests/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_gpu_vs_cpu_diffness/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_silhs_convergence_gfortran/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_api_commitment_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_G_unit/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_silhs_convergence/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_error_handling/Jenkinsfile</affectedPath><affectedPath>run_scripts/run_scm.py</affectedPath><affectedPath>jenkins_tests/clubb_fire_tuning/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_budget_balance/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_release_diff_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_restart_multicol_gfortran_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_restart/Jenkinsfile</affectedPath><commitId>01b5fa7cb4bdd981c17405c3d67992080c4b2ca9</commitId><timestamp>1790992696000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Jenkins test cleanup (#1371)

* Consolidate and simplify CLUBB branch Jenkins jobs

* Parallelize Jenkins workflows and preserve live job scripts

* Remove archive metadata from Jenkins scripts

* Let pyplotgen choose its own case worker count

* Remove retired historical Jenkins tests

* Remove superseded standalone Jenkins workflows

* Remove completed Jenkins migration records

* Resolve JSON overrides in the existing namelist generator

* Inline grid overrides with shared defaults and indent Jenkins scripts

* Preserve full-case debug coverage in combined Jenkins tests

* Separate full-case debug runs from Jenkins compiler matrix
</comment><date>2026-10-02 20:58:16 -0500</date><id>01b5fa7cb4bdd981c17405c3d67992080c4b2ca9</id><msg>Jenkins test cleanup (#1371)</msg><path><editType>edit</editType><file>run_scripts/run_scm.py</file></path><path><editType>edit</editType><file>utilities/create_case_namelist.py</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_plot_ifort_debug/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfile</file></path><path><editType>edit</editType><file>run_scripts/README.md</file></path><path><editType>add</editType><file>jenkins_tests/clubb_restart/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_stats_output_consistency/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_driver_test/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile</file></path><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_restart_multicol_gfortran_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_ifort_build/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_timestep/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_cmake/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_G_unit/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_mac_gfortran_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_nvhpc_debug_build/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_gfortran_build/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_plot_solver_compare/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/LLM_FAILURE_AUTOMATION_DESIGN.md</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_api_commitment_test/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_fire_tuning/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_BFB_varying_flags_gfortran_test/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_release_diff_test/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_gpu_async_output_matching/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_gpu_vs_cpu_diffness/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_column_mirror/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_new_tuner_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_nvhpc_single_prec_build/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_budget_balance/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_python_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_jax_tests/Jenkinsfile</file></path><path><editType>edit</editType><file>utilities/pytests/test_create_case_namelist.py</file></path><path><editType>delete</editType><file>jenkins_tests/github_nightly_update_scripts/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_BFB_e3sm_flags_gfortran_test/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_basic_full_run/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_fire_tuning_gfortran_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_rev_grid_matrix_solve_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_column_mirror_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_cmake_test/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_openmp_gfortran_test/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_single_prec_build/Jenkinsfile</file></path><path><editType>edit</editType><file>src/generalized_grid_test.F90</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_silhs_convergence_gfortran/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_silhs_convergence/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_restart_silhs_gfortran_test/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_openmp/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_timestep_convergence_gfortran_test/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_python/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_gfortran_debug_run/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_release_intel_build/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_driver/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_backwards_compatibility_gfortran_test/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_BFB_gfortran_test/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_error_handling/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_plots/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_generalized_grid/Jenkinsfile</file></path><path><editType>delete</editType><file>jenkins_tests/clubb_G_unit_gfortran_tests/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_jax/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_tuner/Jenkinsfile</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/pyplotgen.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_tuner/Jenkinsfile</affectedPath><commitId>31c332794e716ac7d086ac96c5ae10ce56f55fba</commitId><timestamp>1790994241000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Run Jenkins tuner commands with the project Python environment
</comment><date>2026-10-02 21:24:01 -0500</date><id>31c332794e716ac7d086ac96c5ae10ce56f55fba</id><msg>Run Jenkins tuner commands with the project Python environment</msg><path><editType>edit</editType><file>jenkins_tests/clubb_tuner/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_tuner_job.py</affectedPath><affectedPath>jenkins_tests/clubb_tuner/Jenkinsfile</affectedPath><affectedPath>run_scripts/run_scm_loss.py</affectedPath><commitId>ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3</commitId><timestamp>1790994567000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Initialize the project Python environment in loss and tuner runners
</comment><date>2026-10-02 21:29:27 -0500</date><id>ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3</id><msg>Initialize the project Python environment in loss and tuner runners</msg><path><editType>edit</editType><file>run_scripts/run_tuner_job.py</file></path><path><editType>edit</editType><file>run_scripts/run_scm_loss.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_tuner/Jenkinsfile</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>673</number><url>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/673/</url></nextBuild><previousBuild><number>671</number><url>http://carson.math.uwm.edu/jenkins/job/clubb_BFB_gfortran_test/671/</url></previousBuild></previousBuild></workflowRun>