Started by an SCM change
Obtained jenkins_tests/clubb_bin_diff_regression_e3sm_flags_gfortran/Jenkinsfile from git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
 &gt; git rev-parse --resolve-git-dir /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/.git # timeout=10
Fetching changes from the remote Git repository
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 857656672d17cca5376c2bc7d488bdb666f0aa50 (refs/remotes/origin/master)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 857656672d17cca5376c2bc7d488bdb666f0aa50 # timeout=10
Commit message: "QuadTune: Allow QuadTune to simultaneously tune for multiple 20x20 fields, e.g., SWCF, LWCF, and PRECT."
 &gt; git rev-list --no-walk fc730619ece3d60ae5fba256f6f93f4d9ec30fc4 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Clone SysAdmin to tmp">[Pipeline] { (Clone SysAdmin to tmp)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ rm -rf /home/jenkins/clubb_bit_diff_e3sm_flags_gfortran_workspace/sys_admin
+ git clone <a href='https://github.com/larson-group/sys_admin.git'>https://github.com/larson-group/sys_admin.git</a> /home/jenkins/clubb_bit_diff_e3sm_flags_gfortran_workspace/sys_admin
Cloning into '/home/jenkins/clubb_bit_diff_e3sm_flags_gfortran_workspace/sys_admin'...
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Python Test">[Pipeline] { (Run Python Test)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/jenkins/clubb_bit_diff_e3sm_flags_gfortran_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bit_diff_e3sm_flags_gfortran_workspace/bit_diff_clubb_e3sm_flags_config
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_gfdlact.a
/home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../src/CLUBB_core/grid_class.F90:2336:8:

 2336 |     use constants_clubb, only: &amp;
      |        1
Warning: Unused parameter 'one' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../src/CLUBB_core/grid_class.F90:1994:8:

 1994 |     use constants_clubb, only: &amp;
      |        1
Warning: Unused parameter 'one' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../src/CLUBB_core/input_reader.F90:498:28:

  491 |     do i=1, dim_grid
      |                    2        
......
  498 |         if ( grid(i) &lt; grid(i-1) ) then
      |                            1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../src/CLUBB_core/mono_flux_limiter.F90:456:9:

  456 |       tmp, &amp;
      |         1
Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_param.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_lapack.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libmicrophys_utils.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_parabolic.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_KK_microphys.a
/home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62:

  633 |       do category=1, num_importance_categories
      |                                              2                
......
  638 |                rand_vect(sample) &lt;  category_cumulative_probs(category+1) ) then
      |                                                              1
Warning: Array reference at (1) out of bounds (9 &gt; 8) in loop beginning at (2) [-Wdo-subscript]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_coamps.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_bugsrad.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libsilhs.a
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_morrison.a
../src/ice_dfsn_module.F90:275:25:

  210 |     do k = gr%nzt, 1, -1
      |                        2 
......
  275 |           mass_ice_cryst(k-1) = mass_ice_cryst(k)  &amp;
      |                         1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2) [-Wdo-subscript]
../src/ice_dfsn_module.F90:290:25:

  210 |     do k = gr%nzt, 1, -1
      |                        2 
......
  290 |           mass_ice_cryst(k-1) = mass_ice_cryst(k)
      |                         1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2) [-Wdo-subscript]
../src/morrison_microphys_module.F90:20:33:

   20 |                saturation_formula, &amp;
      |                                 1
Warning: Unused dummy argument 'saturation_formula' at (1) [-Wunused-dummy-argument]
../src/Benchmark_cases/cloud_sed_module.F90:173:45:

  173 |        if ( zt2zm( gr, rcm, k )  &gt; zero .AND. zt2zm( gr, Ncm, k ) &gt; zero ) then
      |                                             1
Warning: Impure function 'redirect_interpolated_azm_k' at (1) might not be evaluated [-Wfunction-elimination]
../src/KK_microphys_module.F90:43:35:

   43 |   subroutine KK_local_microphys( gr, dt, nzt,                           &amp; ! In
      |                                   1
Warning: Unused dummy argument 'gr' at (1) [-Wunused-dummy-argument]
ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo/compile/../lib/libclubb_other.a
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Expected read_random_seed for end function. 
CLUBBStandardsCheck.pl WARNING: Endings of either program, module, subroutine, or function blocks to not match the beginning 
../src/error.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Missing 'implicit none' statements. 'Implicit None' check FAILED! 
CLUBBStandardsCheck.pl Add a line containing 'implicit none' to each program, module, subroutine, and function.
../src/CLUBB_core/mt95.F90
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
718 :     ! MONOFLUX TEST COMMENT DO NOT REMOVE if( any(wpxp_net_adjust /= 0.0) ) write(fstderr,*) "MONOFLUX: wpxp adjusted "
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
../src/CLUBB_core/mono_flux_limiter.F90
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1548 :       !$acc data copyin( C_uu_shr_zeros, C_uu_shr_plus_one, C11_Skw_fnc_zeros, C11_Skw_fnc_plus_one ) &amp;
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1571 :                                  lhs_wp3_pr2_term )                                     ! intent(out)
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
2677 :       !$acc data copyin( C_uu_buoy_zeros, C_uu_buoy_plus_one, C11_Skw_fnc_zeros, C11_Skw_fnc_plus_one ) &amp;
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
../src/CLUBB_core/advance_wp2_wp3_module.F90
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1916 :                                   rhs_bp )                                              ! intent(out)
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1921 :       call wpxp_terms_bp_pr3_rhs( nzm, ngrdcol, C7_Skw_fnc_plus_one, thv_ds_zm, xpthvp, &amp; ! intent(in)
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1922 :                                   rhs_pr3 )                                               ! intent(out)
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
../src/CLUBB_core/advance_xm_wpxp_module.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Expected read_random_seed for end function. 
CLUBBStandardsCheck.pl WARNING: Endings of either program, module, subroutine, or function blocks to not match the beginning 
../src/error.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Missing 'implicit none' statements. 'Implicit None' check FAILED! 
CLUBBStandardsCheck.pl Add a line containing 'implicit none' to each program, module, subroutine, and function.
../src/CLUBB_core/mt95.F90
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
718 :     ! MONOFLUX TEST COMMENT DO NOT REMOVE if( any(wpxp_net_adjust /= 0.0) ) write(fstderr,*) "MONOFLUX: wpxp adjusted "
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
../src/CLUBB_core/mono_flux_limiter.F90
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1548 :       !$acc data copyin( C_uu_shr_zeros, C_uu_shr_plus_one, C11_Skw_fnc_zeros, C11_Skw_fnc_plus_one ) &amp;
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1571 :                                  lhs_wp3_pr2_term )                                     ! intent(out)
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
2677 :       !$acc data copyin( C_uu_buoy_zeros, C_uu_buoy_plus_one, C11_Skw_fnc_zeros, C11_Skw_fnc_plus_one ) &amp;
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
../src/CLUBB_core/advance_wp2_wp3_module.F90
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1916 :                                   rhs_bp )                                              ! intent(out)
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1921 :       call wpxp_terms_bp_pr3_rhs( nzm, ngrdcol, C7_Skw_fnc_plus_one, thv_ds_zm, xpthvp, &amp; ! intent(in)
CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters.
1922 :                                   rhs_pr3 )                                               ! intent(out)
CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters.
../src/CLUBB_core/advance_xm_wpxp_module.F90
--------------------------------------------------------------------------------
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
CLUBBStandardsCheck.pl has begun.
CLUBBStandardsCheck.pl has finished.
Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/857656672d17cca5376c2bc7d488bdb666f0aa50.
Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/fc730619ece3d60ae5fba256f6f93f4d9ec30fc4.
Diffing arm netCDF (*.nc) files
Diffing arm_97 netCDF (*.nc) files
Diffing atex netCDF (*.nc) files
Diffing bomex netCDF (*.nc) files
Diffing dycoms2_rf01 netCDF (*.nc) files
Diffing dycoms2_rf02_ds netCDF (*.nc) files
Diffing gabls3_night netCDF (*.nc) files
Diffing lba netCDF (*.nc) files
Diffing rico netCDF (*.nc) files
Diffing twp_ice netCDF (*.nc) files
Diffing wangara netCDF (*.nc) files

There were no differences detected!

=============================== Configuring Test ===============================


Working directory set to: .
Trying to clone repo...

Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_e3sm_flags_gfortran/repo

Output Save Mode: none

Using branch: master

Making list from 'UnresolvedCommits':

Run Output Path: repo/output

Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\nmv repo/input/tunable_parameters_e3sm/configurable_model_flags.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm_all.bash --min-cases']

Diffing command: repo/run_scripts/run_bindiff_all.bash

=============================== Running Test ===============================

Parsing message from commit: 857656672d17cca5376c2bc7d488bdb666f0aa50

Checking Commit: 857656672d17cca5376c2bc7d488bdb666f0aa50
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out 857656672d17cca5376c2bc7d488bdb666f0aa50
	Running: 'repo/compile/compile.bash'
	Running: '
rm -rf repo/output'
	Running: 'mkdir repo/output'
	Running: '
mv repo/input/tunable_parameters_e3sm/configurable_model_flags.in repo/input/tunable_parameters'
	Running: '
repo/run_scripts/run_scm_all.bash --min-cases'
	Checking out fc730619ece3d60ae5fba256f6f93f4d9ec30fc4
	Running: 'repo/compile/compile.bash'
	Running: '
rm -rf repo/output'
	Running: 'mkdir repo/output'
	Running: '
mv repo/input/tunable_parameters_e3sm/configurable_model_flags.in repo/input/tunable_parameters'
	Running: '
repo/run_scripts/run_scm_all.bash --min-cases'
	Diffing: 'repo/run_scripts/run_bindiff_all.bash 857656672d17cca5376c2bc7d488bdb666f0aa50 fc730619ece3d60ae5fba256f6f93f4d9ec30fc4'

=============================== Test Results ===============================

Commit Range Checked = fc730619ece3d60ae5fba256f6f93f4d9ec30fc4...857656672d17cca5376c2bc7d488bdb666f0aa50

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: 857656672d17cca5376c2bc7d488bdb666f0aa50

=============================== Cleanup ===============================

Removed repo.

Removing all generated output
	REMOVING: fc730619ece3d60ae5fba256f6f93f4d9ec30fc4
	REMOVING: 857656672d17cca5376c2bc7d488bdb666f0aa50

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="24" startId="24" enclosingId="23">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="24">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="26" startId="25">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="27" startId="24">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="28" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="29" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="30" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="31" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="32" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="33" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="34" startId="2">[Pipeline] End of Pipeline
</span>Finished: SUCCESS