Started by an SCM change
Obtained jenkins_tests/cam_scam_gfortran_debug_test/Jenkinsfile from git <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/cam_scam_gfortran_debug_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git init /home/jenkins/workspace/cam_scam_gfortran_debug_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 7a187761ac14a1987d6855c084c7987d2bc23a16 (refs/remotes/origin/clubb_silhs_devel)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 7a187761ac14a1987d6855c084c7987d2bc23a16 # timeout=10
Commit message: "Autoupdated SILHS Commit bb0b6c6de3c0b80ef8599dc9ea18219146ddb20c Author: Gunther Huebler Date: Mon Nov 18 20:21:43 2024 -0600 Clubb Driver Semi GPUization Part4 (#1209) * Initial GPUization, and testing multi_col output method as single precision."
 &gt; git rev-list --no-walk 86df31ff4b0640c119437d4690e9556fa4ff36e5 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Checkout Externals and Copy Custom Files">[Pipeline] { (Checkout Externals and Copy Custom Files)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ python run_scripts/set_up_repo.py .
Checking out externals...
Copying ccs_config files
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Remove Old Output">[Pipeline] { (Remove Old Output)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97
</span><span class="pipeline-new-node" nodeId="20" startId="20" enclosingId="18">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="21" startId="21" enclosingId="20">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="22" startId="21">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="23" startId="20">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="24" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="25" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="26" startId="26" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="27" startId="27" enclosingId="26" label="Run atex">[Pipeline] { (Run atex)
</span><span class="pipeline-new-node" nodeId="28" enclosingId="27">[Pipeline] sh
</span><span class="pipeline-node-28">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ run_scripts/run_scam.bash ATEX
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15
Compset specific settings: name is STOP_N and value is 47
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 0
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 15.0
Compset specific settings: name is PTS_LON and value is 345.0
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid          is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
Pes setting: compset       is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
 Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] 

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-705-g7a187761
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_ATEX
This component includes user_mods /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_ATEX/shell_commands
FROM: /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_ATEX
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_scam_gfortran_debug_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_scam_gfortran_debug_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_ATEX
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2024-11-19 03:47:56 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2024-11-19 03:47:57 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2024-11-19 03:47:57 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cice//cime_config/buildnml
  2024-11-19 03:47:57 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2024-11-19 03:47:57 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2024-11-19 03:47:57 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2024-11-19 03:47:57 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2024-11-19 03:47:57 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2024-11-19 03:47:57 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.241119-034756
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.241119-034756
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.241119-034756
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/share/buildlib.csm_share
Component csm_share build complete with 254 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.241119-034756
   Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 200 warnings
         - Building clm library 
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.241119-034756
Component lnd build complete with 2623 warnings
clm built in 80.920558 seconds
         - Building atm Library 
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.241119-034756
         - Building ice Library 
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.241119-034756
         - Building ocn Library 
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.241119-034756
docn built in 0.858420 seconds
Error: Type mismatch in argument 'nzt' at (1); passed REAL(8) to INTEGER(4)

Error: Type mismatch in argument 'gr' at (1); passed REAL(8) to TYPE(grid)

Component atm build complete with 5443 warnings
cam built in 74.241479 seconds
Component ice build complete with 467 warnings
cice built in 182.738102 seconds
ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.241119-034756
Error building CAM
</span><span class="pipeline-new-node" nodeId="29" startId="27">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="30" startId="26">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="31" startId="31" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="32" startId="32" enclosingId="31" label="Run ARM97 with SILHS">[Pipeline] { (Run ARM97 with SILHS)
</span>Stage "Run ARM97 with SILHS" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="33" enclosingId="32">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="34" startId="32">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="35" startId="31">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="36" startId="36" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="37" startId="37" enclosingId="36" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="38" startId="38" enclosingId="37">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="39" startId="39" enclosingId="38">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="40" enclosingId="39">[Pipeline] cleanWs
</span><span class="pipeline-node-40">[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
</span><span class="pipeline-new-node" nodeId="41" enclosingId="39">[Pipeline] sh
</span><span class="pipeline-node-41">+ chmod -R 755 /home/jenkins/cam_output/
</span><span class="pipeline-new-node" nodeId="42" enclosingId="39">[Pipeline] sh
</span><span class="pipeline-node-42">+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="43" enclosingId="39">[Pipeline] echo
</span><span class="pipeline-node-43">Not all logs were made for atex.
</span><span class="pipeline-new-node" nodeId="44" enclosingId="39">[Pipeline] sh
</span><span class="pipeline-node-44">+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="45" enclosingId="39">[Pipeline] echo
</span><span class="pipeline-node-45">Not all logs were made for ARM97.
</span><span class="pipeline-new-node" nodeId="46" startId="39">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="47" startId="38">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="48" startId="48" enclosingId="37">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="49" startId="49" enclosingId="48">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="50" enclosingId="49">[Pipeline] emailext
</span><span class="pipeline-node-50">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="51" startId="49">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="52" startId="48">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="53" startId="37">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="54" startId="36">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="55" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="56" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="57" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="58" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="59" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE