Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load intel netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ rm -rf clubb CLUBB
+ git clone https://github.com/larson-group/clubb
Cloning into 'clubb'...
+ python3 clubb/compile.py
-- The Fortran compiler identification is IntelLLVM 2023.2.0
-- The C compiler identification is IntelLLVM 2023.2.0
-- The CXX compiler identification is IntelLLVM 2023.2.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-od6qbkw4h7zydnyvjahatxrprimcyseq/compiler/2023.2.0/linux/bin/ifx - skipped
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-od6qbkw4h7zydnyvjahatxrprimcyseq/compiler/2023.2.0/linux/bin/icx - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/intel-oneapi-compilers-2023.2.0-od6qbkw4h7zydnyvjahatxrprimcyseq/compiler/2023.2.0/linux/bin/icpx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiling with double precision
-- Performing Test NETCDF_ABI_COMPATIBLE
-- Performing Test NETCDF_ABI_COMPATIBLE - Success
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/include
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
NetCDF_C_INCLUDE_DIR
NetCDF_C_LIBRARY
NetCDF_Fortran_INCLUDE_DIR
NetCDF_Fortran_LIBRARY
-- Build files have been written to: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/build/intel_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/cmake/toolchains/linux_x86_64_intel.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/build/intel_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble
about to cmnake /home/jenkins/workspace/cam_plot_scam_ifort/clubb/build/intel_PRECdouble
Running CMake configure...
Scanning dependencies of target clubb_lapack_shared
Scanning dependencies of target scm_activation_lib
Scanning dependencies of target clubb_lapack_double
[ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/xerbla.f.o
[ 1%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/lsame.f.o
[ 1%] Building Fortran object src/Microphys/SCM_Activation/CMakeFiles/scm_activation_lib.dir/aer_ccn_act_k.F90.o
Scanning dependencies of target clubb_lapack_single
[ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dcopy.f.o
[ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dasum.f.o
[ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ddot.f.o
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[ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbrfs.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sdot.f.o
[ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbcon.f.o
[ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbequ.f.o
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[ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbrfs.f.o
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[ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbsv.f.o
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[ 6%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbsvx.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtf2.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtf2.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrf.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtrf.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtrs.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrs.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgemm.f.o
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/home/jenkins/workspace/cam_plot_scam_ifort/clubb/src/SILHS/silhs_importance_sample_module.F90(901): warning #5462: Global name too long, shortened from: silhs_importance_sample_moduleeight_cluster_allocation_mp_NUM_CATEGORIES_IN_CLUSTER to: s_importance_sample_moduleeight_cluster_allocation_mp_NUM_CATEGORIES_IN_CLUSTER
num_categories_in_cluster = (/ 1, 1, 1, 1, 1, 1, 1, 1 /)
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Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_standalone_loss
-- Set runtime path of "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_loss_driver_test
-- Set runtime path of "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib:/home/jenkins/workspace/cam_plot_scam_ifort/clubb/install/intel_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
+ python3 clubb/run_scripts/run_scm.py -out_dir CLUBB atex
/home/jenkins/workspace/cam_plot_scam_ifort/CLUBB/atex.in
- using executable: /home/jenkins/workspace/cam_plot_scam_ifort/clubb/run_scripts/../install/latest/clubb_standalone
=================== Running atex ===================
2026/06/26 05:53:45
--------------------------------------------------
Latest git log entry
--------------------------------------------------
A detailed git diff can be found at the end of this file
--------------------------------------------------
Tunable Parameters:
--------------------------------------------------
Parameter Value
--------- -----
C1 = 1.00000000000000000000
C1b = 1.00000000000000000000
C1c = 1.00000000000000000000
C2rt = 2.00000000000000000000
C2thl = 2.00000000000000000000
C2rtthl = 2.00000000000000000000
C4 = 2.00000000000000000000
C_uu_shr = 0.40000000000000002220
C_uu_buoy = 0.29999999999999998890
C6rt = 2.00000000000000000000
C6rtb = 2.00000000000000000000
C6rtc = 1.00000000000000000000
C6thl = 2.00000000000000000000
C6thlb = 2.00000000000000000000
C6thlc = 1.00000000000000000000
C7 = 0.50000000000000000000
C7b = 0.50000000000000000000
C7c = 0.50000000000000000000
C8 = 0.50000000000000000000
C8b = 0.02000000000000000042
C10 = 3.29999999999999982236
C11 = 0.40000000000000002220
C11b = 0.40000000000000002220
C11c = 0.50000000000000000000
C12 = 1.00000000000000000000
C13 = 0.10000000000000000555
C14 = 1.00000000000000000000
C_wp2_pr_dfsn = 0.00000000000000000000
C_wp3_pr_tp = 0.00000000000000000000
C_wp3_pr_turb = 1.00000000000000000000
C_wp3_pr_dfsn = 0.00000000000000000000
C_wp2_splat = 0.00000000000000000000
C6rt_Lscale0 = 14.00000000000000000000
C6thl_Lscale0 = 14.00000000000000000000
C7_Lscale0 = 0.84999999999999997780
wpxp_L_thresh = 60.00000000000000000000
c_K = 0.20000000000000001110
c_K1 = 0.20000000000000001110
nu1 = 20.00000000000000000000
c_K2 = 0.02500000000000000139
nu2 = 1.00000000000000000000
c_K6 = 0.37500000000000000000
nu6 = 5.00000000000000000000
c_K8 = 5.00000000000000000000
nu8 = 20.00000000000000000000
c_K9 = 0.10000000000000000555
nu9 = 10.00000000000000000000
nu10 = 0.00000000000000000000
c_K_hm = 0.75000000000000000000
c_K_hmb = 0.75000000000000000000
K_hm_min_coef = 0.10000000000000000555
nu_hm = 1.50000000000000000000
slope_coef_spread_DG_means_w = 21.00000000000000000000
pdf_component_stdev_factor_w = 1.00000000000000000000
coef_spread_DG_means_rt = 0.80000000000000004441
coef_spread_DG_means_thl = 0.80000000000000004441
gamma_coef = 0.25000000000000000000
gamma_coefb = 0.25000000000000000000
gamma_coefc = 5.00000000000000000000
mu = 0.00100000000000000002
beta = 1.00000000000000000000
lmin_coef = 0.50000000000000000000
omicron = 0.50000000000000000000
zeta_vrnce_rat = 0.00000000000000000000
upsilon_precip_frac_rat = 0.55000000000000004441
lambda0_stability_coef = 0.02999999999999999889
mult_coef = 0.50000000000000000000
taumin = 90.00000000000000000000
taumax = 3600.00000000000000000000
Lscale_mu_coef = 2.00000000000000000000
Lscale_pert_coef = 0.10000000000000000555
alpha_corr = 0.14999999999999999445
Skw_denom_coef = 4.00000000000000000000
c_K10 = 1.00000000000000000000
c_K10h = 1.00000000000000000000
thlp2_rad_coef = 1.00000000000000000000
thlp2_rad_cloud_frac_thresh = 0.10000000000000000555
up2_sfc_coef = 4.00000000000000000000
Skw_max_mag = 10.00000000000000000000
C_invrs_tau_bkgnd = 1.10000000000000008882
C_invrs_tau_sfc = 0.10000000000000000555
C_invrs_tau_shear = 0.14999999999999999445
C_invrs_tau_N2 = 0.40000000000000002220
C_invrs_tau_N2_wp2 = 0.20000000000000001110
C_invrs_tau_N2_xp2 = 0.05000000000000000278
C_invrs_tau_N2_wpxp = 0.00000000000000000000
C_invrs_tau_N2_clear_wp3 = 1.00000000000000000000
C_invrs_tau_wpxp_Ri = 0.34999999999999997780
C_invrs_tau_wpxp_N2_thresh = 0.00033000000000000000
xp3_coef_base = 0.25000000000000000000
xp3_coef_slope = 0.01000000000000000021
altitude_threshold = 100.00000000000000000000
rtp2_clip_coef = 0.50000000000000000000
Cx_min = 0.33000000000000001554
Cx_max = 0.94999999999999995559
Richardson_num_min = 0.25000000000000000000
Richardson_num_max = 400.00000000000000000000
a3_coef_min = 1.00000000000000000000
a_const = 1.80000000000000004441
bv_efold = 5.00000000000000000000
wpxp_Ri_exp = 0.50000000000000000000
z_displace = 25.00000000000000000000
--------------------------------------------------
Preprocessing Directives:
--------------------------------------------------
-DNETCDF enabled
-DCOAMPS_MICRO enabled
-DTUNER disabled
-DSILHS enabled
-Dnooverlap enabled
-Draoffline enabled
-DUSE_BUGSrad_ocast_random disabled
--------------------------------------------------
&model_setting
--------------------------------------------------
runtype = atex
nzmax = 150
grid_type = 1
deltaz = 20.0000000000000
zm_init = 0.000000000000000E+000
zm_top = 3960.00000000000
zt_grid_fname =
zm_grid_fname =
day = 7
month = 2
year = 1969
lat_vals = 14.9406000000000
lon_vals = -35.0000000000000
sfc_elevation = 0.000000000000000E+000
time_initial = 0.000000000000000E+000
time_final = 28800.0000000000
dt_main = 60.0000000000000
dt_rad = 60.0000000000000
sfctype = 1
T_sfc = 288.000000000000
p_sfc = 101500.000000000
sens_ht = 0.000000000000000E+000
latent_ht = 0.000000000000000E+000
fcor = 3.750000000000000E-005
fcor_y = 1.409096792131914E-004
T0 = 300.000000000000
ts_nudge = 86400.0000000000
forcings_file_path =
l_t_dependent = T
l_ignore_forcings = T
l_modify_ic_with_cubic_int = F
l_modify_bc_for_cnvg_test = F
l_input_xpwp_sfc = F
saturation_formula = 3
thlm_sponge_damp_settings%l_sponge_damping = F
rtm_sponge_damp_settings%l_sponge_damping = F
uv_sponge_damp_settings%l_sponge_damping = F
wp2_sponge_damp_settings%l_sponge_damping = F
wp3_sponge_damp_settings%l_sponge_damping = F
up2_vp2_sponge_damp_settings%l_sponge_damping = F
thlm_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
thlm_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
thlm_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
rtm_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
rtm_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
rtm_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
uv_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
uv_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
uv_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
wp2_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
wp2_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
wp2_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
wp3_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
wp3_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
wp3_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
up2_vp2_sponge_damp_settings%tau_sponge_damp_min = 60.0000000000000
up2_vp2_sponge_damp_settings%tau_sponge_damp_max = 1800.00000000000
up2_vp2_sponge_damp_settings%sponge_damp_depth = 0.250000000000000
l_soil_veg = F
l_restart = F
l_input_fields = F
restart_path_case = restart/atex
time_restart = 0.000000000000000E+000
debug_level = 2
sclr_dim = 0
edsclr_dim = 0
iisclr_thl = -2
iisclr_rt = -1
iisclr_CO2 = -1
sclr_tol =
--------------------------------------------------
&stats_setting
--------------------------------------------------
l_stats = T
output_dir = /home/jenkins/workspace/cam_plot_scam_ifort/CLUBB/
fname_prefix = atex
stats_output_filename = atex_stats.nc
stats_tsamp = 60.0000000000000
stats_tout = 60.0000000000000
stats_tstart = 0.000000000000000E+000
stats_tend = 28800.0000000000
l_allow_small_stats_tout = F
Constant flags:
l_pos_def = F
l_gamma_Skw = T
Constant tolerances [units]
rt_tol [kg/kg] = 1.000000000000000E-008
thl_tol [K] = 1.000000000000000E-002
w_tol [m/s] = 2.000000000000000E-002
--------------------------------------------------
µphysics_setting
--------------------------------------------------
microphys_scheme = none
l_cloud_sed = F
sigma_g = 1.50000000000000
l_graupel = F
l_hail = F
l_seifert_beheng = F
l_predict_Nc = F
l_const_Nc_in_cloud = F
specify_aerosol = morrison_lognormal
l_subgrid_w = T
l_arctic_nucl = F
l_cloud_edge_activation = F
l_fix_pgam = F
l_in_cloud_Nc_diff = T
l_var_covar_src = F
l_upwind_diff_sed = F
lh_microphys_type = disabled
lh_num_samples = 2
lh_sequence_length = 1
lh_seed = 5489
l_fix_w_chi_eta_correlations = T
l_silhs_KK_convergence_adj_mean = F
importance_prob_thresh = 1.000000000000000E-008
host_dx = 1000000.00000000
host_dy = 1000000.00000000
hmp2_ip_on_hmm2_ip_slope%rr = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%ri = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%rs = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%rg = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Nr = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ni = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ni = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_slope%Ng = 2.120000000000000E-005
hmp2_ip_on_hmm2_ip_intrcpt%rr = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%ri = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%rs = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%rg = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Nr = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.540000000000000
hmp2_ip_on_hmm2_ip_intrcpt%Ng = 0.540000000000000
Ncnp2_on_Ncnm2 = 1.00000000000000
C_evap = 0.860000000000000
r_0 = 2.500000000000000E-005
microphys_start_time = 0.000000000000000E+000
Nc0_in_cloud = 100000000.000000
ccnconst = 120.000000000000
ccnexpnt = 0.400000005960464
aer_rm1 = 1.100000002196566E-008
aer_rm2 = 5.999999785899490E-008
aer_n1 = 125000000.000000
aer_n2 = 65000000.0000000
aer_sig1 = 1.20000004768372
aer_sig2 = 1.70000004768372
pgam_fixed = 5.00000000000000
precip_frac_calc_type = 2
--------------------------------------------------
&SILHS_setting
--------------------------------------------------
Warning: missing correlation input file(s): ../input/case_setups/atex_corr_arra
y_cloud.in and/or ../input/case_setups/atex_corr_array_below.in
The default correlation arrays will be used.
--------------------------------------------------
&radiation_setting
--------------------------------------------------
rad_scheme = simplified
sol_const = 1367.00000000000
alvdr = 0.100000000000000
alvdf = 0.100000000000000
alndr = 0.100000000000000
alndf = 0.100000000000000
radiation_top = 50000.0000000000
F0 = 74.0000000000000
F1 = 0.000000000000000E+000
kappa = 130.000000000000
gc = 0.860000000000000
omega = 0.996500000000000
slr = 1.00000000000000
l_rad_above_cloud = F
l_sw_radiation = F
l_fix_cos_solar_zen = F
l_use_default_std_atmosphere = T
Fs_values = 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
cos_solar_zen_values = -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
cos_solar_zen_times = -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
-999.000000000000 -999.000000000000 -999.000000000000
eff_drop_radius = 1.000000000000000E-005
--------------------------------------------------
&configurable_clubb_flags_nl
--------------------------------------------------
iiPDF_type = 1
ipdf_call_placement = 2
penta_solve_method = 2
tridiag_solve_method = 2
grid_remap_method = 1
grid_adapt_in_time_method = 0
l_use_precip_frac = T
l_predict_upwp_vpwp = T
l_ho_nontrad_coriolis = F
l_ho_trad_coriolis = F
l_min_wp2_from_corr_wx = F
l_min_xp2_from_corr_wx = T
l_C2_cloud_frac = F
l_diffuse_rtm_and_thlm = F
l_stability_correct_Kh_N2_zm = F
l_calc_thlp2_rad = T
l_upwind_xpyp_ta = T
l_upwind_xm_ma = T
l_uv_nudge = F
l_rtm_nudge = F
l_tke_aniso = T
l_vert_avg_closure = F
l_trapezoidal_rule_zt = F
l_trapezoidal_rule_zm = F
l_call_pdf_closure_twice = F
l_standard_term_ta = F
l_partial_upwind_wp3 = F
l_godunov_upwind_wpxp_ta = F
l_godunov_upwind_xpyp_ta = F
l_use_cloud_cover = F
l_diagnose_correlations = F
l_calc_w_corr = F
l_const_Nc_in_cloud = F
l_fix_w_chi_eta_correlations = T
l_stability_correct_tau_zm = F
l_damp_wp2_using_em = T
l_do_expldiff_rtm_thlm = F
l_Lscale_plume_centered = F
l_diag_Lscale_from_tau = T
l_use_C7_Richardson = T
l_use_C11_Richardson = F
l_use_shear_Richardson = F
l_brunt_vaisala_freq_moist = F
l_use_thvm_in_bv_freq = F
l_rcm_supersat_adj = T
l_damp_wp3_Skw_squared = T
l_prescribed_avg_deltaz = F
l_lmm_stepping = F
l_e3sm_config = F
l_vary_convect_depth = F
l_use_tke_in_wp3_pr_turb_term = T
l_use_tke_in_wp2_wp3_K_dfsn = F
l_use_wp3_lim_with_smth_Heaviside = F
l_smooth_Heaviside_tau_wpxp = T
l_modify_limiters_for_cnvg_test = F
l_enable_relaxed_clipping = F
l_linearize_pbl_winds = F
l_mono_flux_lim_thlm = T
l_mono_flux_lim_rtm = T
l_mono_flux_lim_um = T
l_mono_flux_lim_vm = T
l_mono_flux_lim_spikefix = T
l_host_applies_sfc_fluxes = F
l_wp2_fill_holes_tke = T
l_add_dycore_grid = F
--------------------------------------------------
git diff src/
--------------------------------------------------
See *setup.txt file in output folder
Path to sounding: atex_sounding.in
File exists? T
Path to sclr_sounding: atex_sclr_sounding.in
File exists? T
Path to edsclr_sounding: atex_edsclr_sounding.in
File exists? T
Reading in sounding information
z = 0.000000000000000E+000 150.000000000000 700.000000000000
750.000000000000 1400.00000000000 1650.00000000000
4000.00000000000
u = -11.0000000000000 -10.5500000000000 -8.90000000000000
-8.75000000000000 -6.80000000000000 -5.75000000000000
1.00000000000000
v = -2.00000000000000 -1.90000000000000 -1.10000000000000
-1.00000000000000 -0.140000000000000 0.180000000000000
2.75000000000000
ug = -11.0000000000000 -10.5500000000000 -8.90000000000000
-8.75000000000000 -6.80000000000000 -5.75000000000000
1.00000000000000
vg = -2.00000000000000 -1.90000000000000 -1.10000000000000
-1.00000000000000 -0.140000000000000 0.180000000000000
2.75000000000000
theta = 295.750000000000 295.750000000000
295.750000000000 296.125000000000 297.750000000000
306.750000000000 314.975000000000
rt = 1.300000000000000E-002 1.250000000000000E-002 1.250000000000000E-002
1.150000000000000E-002 1.025000000000000E-002 4.500000000000000E-003
4.500000000000000E-003
p_in_Pa = -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000 -999.900000000000
-999.900000000000 -999.900000000000
subs = 0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000 0.000000000000000E+000 0.000000000000000E+000
0.000000000000000E+000
When the l_diag_Lscale_from_tau flag is enabled, C2rt must have a value of 1.
C2rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2thl must have a value of 1.
C2thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2rtthl must have a value of 1
.
C2rtthl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rt must have a value of 1.
C6rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rtb must have a value of 1.
C6rtb = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thl must have a value of 1.
C6thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thlb must have a value of 1.
C6thlb = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2rt must have a value of 1.
C2rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2thl must have a value of 1.
C2thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C2rtthl must have a value of 1
.
C2rtthl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rt must have a value of 1.
C6rt = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6rtb must have a value of 1.
C6rtb = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thl must have a value of 1.
C6thl = 2.00000000000000
Warning in check_clubb_settings_api
When the l_diag_Lscale_from_tau flag is enabled, C6thlb must have a value of 1.
C6thlb = 2.00000000000000
Warning in check_clubb_settings_api
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iteration: 479 / 480 -- time = 28740.0 / 28800.0
iteration: 480 / 480 -- time = 28800.0 / 28800.0
CLUBB-TIMER time_loop_init = 0.1160
CLUBB-TIMER time_clubb_advance = 2.4332
CLUBB-TIMER time_clubb_pdf = 0.0013
CLUBB-TIMER time_SILHS = 0.0011
CLUBB-TIMER time_microphys_scheme = 0.0000
CLUBB-TIMER time_microphys_advance = 0.0000
CLUBB-TIMER time_loop_end = 0.0000
CLUBB-TIMER time_adapt_grid = 0.0000
CLUBB-TIMER time_total = 5.1676
Program exited normally
