Started by an SCM change
Obtained jenkins_tests/cam_plot_scam_ifort/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on nelson in /home/jenkins/workspace/cam_plot_scam_ifort
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
> git init /home/jenkins/workspace/cam_plot_scam_ifort # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
> git --version # timeout=10
> git --version # 'git version 2.34.1'
> git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision dd174450eacbaa971ce9e1405296ea7f60a671a1 (refs/remotes/origin/clubb_silhs_devel)
Commit message: "Autoupdated CLUBB_core Commit be901594bb8e40f6b634f35f1488c0e5f9022e8f Author: Brian Griffin Date: Sat Mar 1 10:38:42 2025 -0600 Generalized grid (#1230) * Added the necessary grid variables to the grid type (they're hardwired for an Ascending Grid for now)."
> git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
> git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f dd174450eacbaa971ce9e1405296ea7f60a671a1 # timeout=10
> git rev-list --no-walk 4df60bde4a9547cf98ad1f6531fdd945a39338fd # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_repo.py .
Checking out externals...
Copying ccs_config files
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Sed Commands)
[Pipeline] sh
+ sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash
[Pipeline] sh
+ sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Remove Old Output)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run ATEX)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ run_scripts/run_scam.bash ATEX
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15
Compset specific settings: name is STOP_N and value is 47
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 0
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 15.0
Compset specific settings: name is PTS_LON and value is 345.0
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1}
Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp']
This is a CESM scientifically supported compset at this resolution.
No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-756-gdd174450
Batch_system_type is none
Creating Case directory /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX
This component includes user_mods /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX/shell_commands
FROM: /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_plot_scam_ifort/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_plot_scam_ifort/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX
sharedlib_only is False
model_only is False
Generating component namelists as part of build
2025-03-02 03:50:07 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/buildnml
...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in
2025-03-02 03:50:07 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-03-02 03:50:07 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/cice//cime_config/buildnml
2025-03-02 03:50:07 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-03-02 03:50:08 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-03-02 03:50:08 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-03-02 03:50:08 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-03-02 03:50:08 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-03-02 03:50:08 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250302-035007
Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/build_scripts/buildlib.gptl
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250302-035007
Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250302-035007
Calling /home/jenkins/workspace/cam_plot_scam_ifort/share/buildlib.csm_share
Component csm_share build complete with 12 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250302-035007
Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/cdeps/cime_config/buildlib
- Building clm library
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250302-035007
Component lnd build complete with 18 warnings
clm built in 115.133968 seconds
- Building atm Library
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250302-035007
- Building ice Library
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250302-035007
- Building ocn Library
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250302-035007
docn built in 0.503246 seconds
/home/jenkins/workspace/cam_plot_scam_ifort/src/physics/clubb/src/CLUBB_core/advance_clubb_core_module.F90(2270): error #6633: The type of the actual argument differs from the type of the dummy argument. [EDSCLRM]
/home/jenkins/workspace/cam_plot_scam_ifort/src/physics/clubb/src/CLUBB_core/advance_clubb_core_module.F90(2268): error #6631: A non-optional actual argument must be present when invoking a procedure with an explicit interface. [FIELD]
/home/jenkins/workspace/cam_plot_scam_ifort/src/physics/clubb/src/CLUBB_core/advance_clubb_core_module.F90(2270): error #6634: The shape matching rules of actual arguments and dummy arguments have been violated. [EDSCLRM]
Component atm build complete with 36 warnings
cam built in 253.909834 seconds
Component ice build complete with 1 warnings
cice built in 696.561636 seconds
ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250302-035007
Error building CAM
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run ARM97 with SILHS)
Stage "Run ARM97 with SILHS" skipped due to earlier failure(s)
[Pipeline] getContext
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile and Run CLUBB)
Stage "Compile and Run CLUBB" skipped due to earlier failure(s)
[Pipeline] getContext
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Plot)
Stage "Plot" skipped due to earlier failure(s)
[Pipeline] getContext
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output/
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*.gz: No such file or directory
[Pipeline] echo
ATEX WARNING: One or more of the build logs were not zipped, this means compilation did not finish
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory
[Pipeline] echo
ATEX WARNING: One or more of the run logs were not zipped, this means the code did not run to completion
[Pipeline] sh
+ cat '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*'
cat: '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.*': No such file or directory
[Pipeline] echo
ATEX WARNING: One of the log files (build or run) were not found - the failure must have occured before their creation
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*.gz: No such file or directory
[Pipeline] echo
ARM97 WARNING: One or more of the build logs were not zipped, this means compilation did not finish
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_ARM97/run/cesm.log.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_ARM97/run/cesm.log.*.gz: No such file or directory
[Pipeline] echo
ARM97 WARNING: One or more of the run logs were not zipped, this means the code did not run to completion
[Pipeline] sh
+ cat '/home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*'
cat: '/home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.*': No such file or directory
[Pipeline] echo
ARM97 WARNING: One of the log files (build or run) were not found - the failure must have occured before their creation
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE