Console Output

Started by user unknown or anonymous
Obtained jenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_scam_ifort_ncar_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
 > git init /home/jenkins/workspace/cam_scam_ifort_ncar_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 # timeout=10
Commit message: "Renaming tests to make clear which uses debugging and which doesnt. Intel-oneapi currently doesn't work with debugging, see https://github.com/larson-group/sys_admin/issues/829\#issuecomment-2212729099"
 > git rev-list --no-walk d90b25c0dd5e712488e84d9668f1e2049ecbd562 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_cam_coarse_res.py .
Checking out externals...
Copying ccs_config files
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Sed Commands)
[Pipeline] sh
+ sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash
[Pipeline] sh
+ sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Remove Old Output)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_output/scratch/test_scam_atex /home/jenkins/cam_output/scratch/test_scam_arm97
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run atex)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export PATH MANPATH LD_LIBRARY_PATH
++ export SVNROOT=http://carson.math.uwm.edu/repos
++ SVNROOT=http://carson.math.uwm.edu/repos
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju
++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju
++ source /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load intel esmf
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ run_scripts/run_scam.bash atex
----- Case Setup -----
Compset longname is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18
Compset specific settings: name is START_TOD and value is 84585
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 36.6
Compset specific settings: name is PTS_LON and value is 262.5
Machine is larson-group
Pes setting: grid          is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
Pes setting: compset       is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': -1, 'NTASKS_LND': -1, 'NTASKS_ROF': -1, 'NTASKS_ICE': -1, 'NTASKS_OCN': -1, 'NTASKS_GLC': -1, 'NTASKS_WAV': -1, 'NTASKS_CPL': -1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
 Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] 

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-13-gb70e8c0c
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex
This component includes user_mods /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex/shell_commands
FROM: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex
Adding user mods directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_atex
RUN: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex/shell_commands
FROM: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_scam_ifort_ncar_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_scam_ifort_ncar_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2024-07-10 16:27:46 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_atex/run/atm_in 
  2024-07-10 16:27:47 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2024-07-10 16:27:47 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cice//cime_config/buildnml
  2024-07-10 16:27:47 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2024-07-10 16:27:47 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2024-07-10 16:27:47 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2024-07-10 16:27:47 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2024-07-10 16:27:47 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2024-07-10 16:27:47 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/gptl.bldlog.240710-162746
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.gptl
Building mct with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/mct.bldlog.240710-162746
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.mct
Component mct build complete with 110 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/pio.bldlog.240710-162746
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/csm_share.bldlog.240710-162746
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/buildlib.csm_share
Component csm_share build complete with 13 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/CDEPS.bldlog.240710-162746
   Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cdeps/cime_config/buildlib
         - Building clm library 
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/lnd.bldlog.240710-162746
Component lnd build complete with 17 warnings
clm built in 91.820857 seconds
         - Building atm Library 
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.240710-162746
         - Building ice Library 
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/ice.bldlog.240710-162746
         - Building ocn Library 
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/ocn.bldlog.240710-162746
docn built in 0.668862 seconds
cice built in 112.823608 seconds
Component atm build complete with 38 warnings
cam built in 426.610660 seconds
Building cesm from /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.bldlog.240710-162746 
Component cesm exe build complete with 1 warnings
ERROR: BUILD FAIL: buildexe failed, cat /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.bldlog.240710-162746
Error building CAM
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run arm97 with SILHS)
Stage "Run arm97 with SILHS" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output/
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were made for atex.
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were made for arm97.
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE