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updates (#173)

Updates to make cam work with the new spack system. This also includes changing the traditional "nelson" name for our machine to a general "larson-group" one. Also moving our custom cmake and config files from "cime_config_cesm_machines_files" to "custom_ccs_config_files" because the new build system in cam is named ccs_config.

* Initial changes to get code working with the new spack+module system. See https://github.com/larson-group/sys_admin/issues/829

* Making module versions specific in config_machines. This will prevent cam from breaking if someone installs another version of a package like esmf.
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_class='hudson.plugins.git.GitChangeSet'><affectedPath>mixing_length.F90</affectedPath><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>advance_xm_wpxp_module.F90</affectedPath><affectedPath>advance_helper_module.F90</affectedPath><commitId>1af8762fc4b0c31a64535f1cb6689d893d036926</commitId><timestamp>1719948922000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Ri_zm calc (Part 2) - Move the brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd (#1156)

CLUBB ticket #1145

Includes previous steps:
* First step: Move call to calc_bv
* Ri_zm calc (Part 1.5) - Adjusted signature of diagnose_Lscale_from_tau #1145

Newest changes: Ri_zm calc (Part 2) - Move brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd

`brunt_vaisala_frq_sqd_smth` is now calculated in subroutine `calc_brunt_vaisala_freq_sqd` and it is now written to disk in `advance_clubb_core` with all the other `brunt_vaisala` variables.

Unfortunately, I had to make a couple more changes since moving this calculation into `calc_brunt_vaisala_freq_sqd` meant that any subroutine involved in calling `calc_stability_correction` would need to get `l_modify_limiters_for_cnvg_test` fed in, because `calc_brunt_vaisala_freq_sqd` is also called in `calc_stability_correction`.

This commit is BIT_CHANGING since `brunt_vaisala_frq_sqd_smth` used to be all zeros before this change in Lscale mode and now it is actually calculated. BFB in taus code.
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