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Build #370 (May 17, 2024, 1:12:04 PM)

Changes
  1. Feat: Changes to include GEOS-Chem as a chemistry option for CESM (details / githubweb)
  2. Squashed of 50+ commits from Thibaud Fritz (details / githubweb)
  3. Squashed 5 commits from Haipeng Lin (details / githubweb)
  4. Squashed 2 commits from Thibaud Fritz (details / githubweb)
  5. Squashed 4 commits from Lizzie Lundgren (details / githubweb)
  6. Squashed 60+ commits from Thibaud Fritz (details / githubweb)
  7. Feat: Write ZPJ values for RXN_NO2, RXN_O3_1/2a into HCO_IN_JNO2, HCO_IN_JOH for HEMCO ParaNOx extension. (details / githubweb)
  8. Squashed 4 commits from Thibaud Fritz (details / githubweb)
  9. Feat: Now retrieve fields from HEMCO using 2-D pbuf fields (details / githubweb)
  10. Squashed 10 commits from Thibaud Fritz (details / githubweb)
  11. Feat: Retrieve ParaNOx deposition fluxes from HEMCO (details / githubweb)
  12. Squashed 18 commits from Thibaud Fritz (details / githubweb)
  13. Fix: correct improper merge conflict handling introduced during rebase (details / githubweb)
  14. Feat: Return in sox_cldaero_mod if running with GEOS-Chem (details / githubweb)
  15. Fix: correct wrong indexes introduced by manual revert; rm GC wetscav (details / githubweb)
  16. Added coefficient arrays used to compute the horizontal gradients of (details / githubweb)
  17. Added MPAS mesh information and coefficients for computing (details / githubweb)
  18. Added the option to compute the frontogenesis function and the (details / githubweb)
  19. Enable compilation in CESM 2.3 for non-GEOS-Chem case (details / githubweb)
  20. Build fixes for CESM-GC within CESM: non-GEOS-Chem cases (details / githubweb)
  21. Update GEOS-Chem interface code for compatibility with CESM 2.3 (details / githubweb)
  22. Fix bug in J-value diagnostic names for O3O1D (details / githubweb)
  23. Remove remaining references to compset FSPCAMM_GC (details / githubweb)
  24. GEOS-Chem driver routine updates for compatibility with GEOS-Chem 13.3.4 (details / githubweb)
  25. Modifications for new GEOS-Chem species (HMS) in version 13.3 (details / githubweb)
  26. Use ESCOMP/HEMCO_CESM rather than H. Lin's fork (details / githubweb)
  27. Change GEOS-Chem branch name to diverge from version used in CESM-GC 2.1 (details / githubweb)
  28. Set default namelist values for cam_physics_mesh in geos-chem use cases (details / githubweb)
  29. Bug fix: increase module parameter gas_pcnst by 1 to include HMS (details / githubweb)
  30. Modifications to turn off dry deposition and dependencies on CLM for land (details / githubweb)
  31. Kludge to get by missing Henry's Law coeffs for certain species (details / githubweb)
  32. Configure compsets that use GEOS-Chem to also use HEMCO (details / githubweb)
  33. Added high-level log prints (details / githubweb)
  34. Use same RUN_STARTDATE for compset FCHIST_GC as used in FCHIST (details / githubweb)
  35. Revert hist_geoschem.xml to original; will adjust in user_nl_cam (details / githubweb)
  36. Remove compset that uses geoschem_mam3 (details / githubweb)
  37. No diff updates to GEOS-Chem use cases to document diffs with non-GC (details / githubweb)
  38. committing changes toward running caram_dust with SE Dycode (details / githubweb)
  39. Clean up GEOS-Chem compset namelists (details / githubweb)
  40. Move GEOS-Chem deposition lists to common file with namelist defaults (details / githubweb)
  41. Updates to Neu wet dep in GEOS-Chem for Henry's Law coeffs from netcdf (details / githubweb)
  42. Update Neu wet dep debug prints in GEOS-Chem (details / githubweb)
  43. Preliminary updates for GEOS-Chem 14.0 (details / githubweb)
  44. Add debug print option within GEOS-Chem chemistry.F90 (details / githubweb)
  45. changes for unstructured grids (details / githubweb)
  46. add izumi_nag carma tests (details / githubweb)
  47. Fixes for using GEOS-Chem 14.0 (details / githubweb)
  48. Updates to get gas-phase dry deposition when using GEOS-Chem to run (details / githubweb)
  49. read cell_gradient_coefs from IC file only if front GWs are turn on; cold start CLM in mpasa480 test; clean up (details / githubweb)
  50. add cheyenne tests (details / githubweb)
  51. ignore fixedinit issues with SE dycore; revert carma_get profile routines (details / githubweb)
  52. Turn on frontogenesis GWs in WACCM-SC; add cheyenne tests (details / githubweb)
  53. fix restarts by haloing tracers; append constants with _r8 kind (details / githubweb)
  54. some code clean up (details / githubweb)
  55. Change geoschem .exclude file to use relative paths to files (details / githubweb)
  56. Clean up new debug print code in physpkg.F90 (details / githubweb)
  57. Expand error prints in constituents module for clarify (details / githubweb)
  58. Remove online land type option when using GEOS-Chem and use Olson/XLAI (details / githubweb)
  59. Update GEOS-Chem chemistry log messages for clarity (details / githubweb)
  60. Remove unused code from GEOS-Chem chemistry.F90 file (details / githubweb)
  61. Externals update to use latest GEOS-Chem, HEMCO_CESM, and HEMCO (details / githubweb)
  62. Temporarily put wetdep and drydep lists in namelist file per GEOS-Chem case (details / githubweb)
  63. Add deposition coefficient data file to GEOS-Chem use case files (details / githubweb)
  64. Minor edit to Neu wet deposition debug code when using GEOS-Chem (details / githubweb)
  65. Add non-advected GEOS-Chem species OH and HO2 to solsym for diagnostics (details / githubweb)
  66. Change default FCSD_GC year from 2005 to 2015 (details / githubweb)
  67. Fix parameters incremented for non-advected species added to solysm (details / githubweb)
  68. Change Default FCHIST_GC run startdate year from 2010 t0 2015 (details / githubweb)
  69. Add friction velocity as a nuopc import in CAM (details / githubweb)
  70. use carma base tag carma4_01; misc cleanup (details / githubweb)
  71. correct dry dep history field description; misc cleanup (details / githubweb)
  72. set ubc_specifier for waccm_ma_sulfur chemistry (details / githubweb)
  73. Add hemco_grid_xdim, hemco_grid_ydim namelist variables to configure HEMCO grid. (details / githubweb)
  74. Update HEMCO tag to hemco-cesm1_0_hemco3_5_0 (details / githubweb)
  75. Experimental first version of New History Diagnostics (details / githubweb)
  76. Disable legacy Jval_ approach; new history diags with debug (wip) (details / githubweb)
  77. Fix diagnostic chunk bug; now functional (details / githubweb)
  78. Update HEMCO external to 3.5.1 (details / githubweb)
  79. Add FCnudged_GC component set based on FCnudged. (details / githubweb)
  80. Add hist_geoschem_nudged.xml configuration for FCnudged_GC (details / githubweb)
  81. Remove config_compsets.xml change that does not belong to this branch and was added in error (details / githubweb)
  82. Expand CAM history field name maximum to 32 chars (details / githubweb)
  83. Fix bug that was forcing HEMCO_Config.rc as hemco_config_file (details / githubweb)
  84. Fix typo in HEMCO-CESM tag (details / githubweb)
  85. fix bug in Z3GM diagnostic (details / githubweb)
  86. Added coefficient arrays used to compute the horizontal gradients of (details / githubweb)
  87. Added MPAS mesh information and coefficients for computing (details / githubweb)
  88. Added the option to compute the frontogenesis function and the (details / githubweb)
  89. read cell_gradient_coefs from IC file only if front GWs are turn on; cold start CLM in mpasa480 test; clean up (details / githubweb)
  90. Turn on frontogenesis GWs in WACCM-SC; add cheyenne tests (details / githubweb)
  91. fix restarts by haloing tracers; append constants with _r8 kind (details / githubweb)
  92. some code clean up (details / githubweb)
  93. fix bug in Z3GM diagnostic (details / githubweb)
  94. Remove debugging routines (details / githubweb)
  95. Fix HEMCO namelist bugs (details / githubweb)
  96. Upgrade GEOS-Chem to version 14.0.1 (details / githubweb)
  97. Fix MEGAN emissions in CESM-GC - active_fall_flxvoc is a logical and not integer (details / githubweb)
  98. Add comments on xml source (details / githubweb)
  99. Update comments; remove more debug routines (details / githubweb)
  100. Remove array temporary allocations; now use one outTmp_3D and outTmp_2D for 3D and 2D data. (details / githubweb)
  101. Remove unnecessary legacy code in cesmgc_diag_mod.F90 (details / githubweb)
  102. Update comments; remove extraneous GC_FAILURE call to address review comments (details / githubweb)
  103. Rainbow code changes first pass (details / githubweb)
  104. Code cleanup, bug fixed (details / githubweb)
  105. Change CMEPS and coupler remotes from fvitt to ESCOMP github (details / githubweb)
  106. Initial machine learning code for PUMAS (details / githubweb)
  107. Update PUMAS external for amk and ank allocations (details / githubweb)
  108. Reduce GEOS-Chem dir mozart files; build mozart and pp_none if geos-chem (details / githubweb)
  109. Initial mods for namelist micro_mg_warm_rain (details / githubweb)
  110. Removed unused file geoschem/getLandTypes.F90 (details / githubweb)
  111. Modify mozart module mo_neu_wetdep for use when GEOS-Chem chemistry enabled (details / githubweb)
  112. Use mozart chem_prod_loss_diags.F90 rather than copy if GEOS-Chem enabled (details / githubweb)
  113. Update PUMAS tag (details / githubweb)
  114. Update PUMAS hash (details / githubweb)
  115. Modifications to use Mozart short_lived_species module in GEOS-Chem (details / githubweb)
  116. Add missing GEOS-Chem diagnostics subroutine calls; cleanup other files (details / githubweb)
  117. Update GEOS-Chem compset diagnostics list; fix build-namelist permissions (details / githubweb)
  118. Update cam_physics_mesh defaults for HEMCO (details / githubweb)
  119. Various code cleanup (details / githubweb)
  120. Fix for modal_aer_opt failures (details / githubweb)
  121. Enclose additional section in check for machine learning code (details / githubweb)
  122. Draft commit to support HEMCO_CESM v1.1.0. (details / githubweb)
  123. Update PUMAS external (details / githubweb)
  124. Add stochastic_collect_tau_cam.F90 (details / githubweb)
  125. Separate stochastic module into CAM and PUMAS specific and introduce CAM's version (details / githubweb)
  126. adjust regression test list; minor code changes (details / githubweb)
  127. fix issue #690 (details / githubweb)
  128. Bring in updated ML code (details / githubweb)
  129. move location of stochastic_collect_tau_cam.F90 from cam to cam_dev directory (details / githubweb)
  130. Update PUMAS (details / githubweb)
  131. Tag to upstream HEMCO-CESM 1.1.0 and HEMCO 3.6.0 (details / githubweb)
  132. Fix automatic array indexing (details / githubweb)
  133. More cleanup (details / githubweb)
  134. Updates H2SO4 production rate passed to MAM4 sulfate nucleation (details / githubweb)
  135. Use online CLM albedo for CESM-GC simulations instead of offline albedo from archive (details / githubweb)
  136. Set rxt_tag_cnt to 0 in GEOS-Chem as feature is unused (details / githubweb)
  137. Update cesmgc_diag_mod for moved ucx_mod module variables (details / githubweb)
  138. Remove LWI; remove cleanup_ucx (details / githubweb)
  139. Update to upstream HEMCO-CESM 1.1.1 and HEMCO 3.6.2 (details / githubweb)
  140. Also run Init_UCX per State_Chm, not just once (details / githubweb)
  141. Add comments on aerosol mapping code (details / githubweb)
  142. Change GEOS-Chem version tag to 14.1.1 (details / githubweb)
  143. Change names of GEOS-Chem diagnostic and emissions modules and subroutines (details / githubweb)
  144. Change emulate to emulated (details / githubweb)
  145. Introduce namelist setting of files for emulated (details / githubweb)
  146. Move short-lived reference MMR array from chem_mods to short-lived module (details / githubweb)
  147. Delete unused GEOS-Chem build code (details / githubweb)
  148. Remove emulated from if block where values not being set/used (details / githubweb)
  149. Assorted minor code cleanup; add preliminary GEOS-Chem tests (details / githubweb)
  150. Now emit surface emissions consistently as a 3-D flux term. (details / githubweb)
  151. Fix SOA mapping indices (details / githubweb)
  152. Fix TSKIN field to correct value (details / githubweb)
  153. Update upstream HEMCO-CESM 1.1.3 (details / githubweb)
  154. Fix other indices in the reverse direction. (details / githubweb)
  155. reviewers misc change requests (details / githubweb)
  156. Fix dry and wet deposition for GEOS-Chem non-gas species. (details / githubweb)
  157. Fix GEOS-Chem tests by replacing StrSplit in chem_readnl (details / githubweb)
  158. Andrew's mods (details / githubweb)
  159. cleanup (details / githubweb)
  160. Update PUMAS external (details / githubweb)
  161. merge rrtmgp code from brianpm fork (details / githubweb)
  162. update .gitignore with rrtmgp external (details / githubweb)
  163. turn on hb where CLUBB not active when running cam_dev physics (details / githubweb)
  164. get rrtmgp from my fork (details / githubweb)
  165. comment out non-working memory monitoring code (details / githubweb)
  166. Update lightning emissions code in GEOS-Chem interface for compatibility (details / githubweb)
  167. aerosol optics interface for MAM (details / githubweb)
  168. code clean up (details / githubweb)
  169. initialize dustvol to zero; corections to add_default fields; minor clean up (details / githubweb)
  170. tweak to default hist fields (details / githubweb)
  171. use bin names for AOD diags; some cleanup (details / githubweb)
  172. fix cam4 phys issue (details / githubweb)
  173. use chem trop lev; correct hist flds in use cases (details / githubweb)
  174. hygroscopicity in pom phys prop file is suspect -- revert to hard-wired hygroscopicities (details / githubweb)
  175. only scale divergence damping if there is scaling to do (details / githubweb)
  176. change to namelist (instead of keying off cam_dev in code) (details / githubweb)
  177. removed references to carma aerosol objects (details / githubweb)
  178. misc clean up (details / githubweb)
  179. Add namelist for kbarf file (details / githubweb)
  180. Update PUMAS external (details / githubweb)
  181. new implementation only applying free atmosphere HB (not PBL part) (details / githubweb)
  182. Update PUMAS (details / githubweb)
  183. Update PUMAS to fix failing cam_dev test (details / githubweb)
  184. use parameters for nswbands, nlwbands (details / githubweb)
  185. remove references to b_checker (details / githubweb)
  186. revert ntop_eddy_pres to prev -5 values and allow clubb_do_hb_above to be active for cam6 as well as cam_dev (details / githubweb)
  187. forgot to add that I updated to cam6_3_117 in last commit, this commit added changelog boilerplate for this PR and fixed comment in vertical_diffusion (adding this change to cam6 and cam_dev) (details / githubweb)
  188. revert check for add kvh to pbuf, older code worked fine and seemed more straight forward, changed if check on cam6/cam_dev to use clubb_do_hb_above to allow namelist_defaults to handle what physics work with new clubb hb variable (details / githubweb)
  189. code review changes (details / githubweb)
  190. minor misc code review changes (details / githubweb)
  191. Update PUMAS external (details / githubweb)
  192. Update PUMAS external (details / githubweb)
  193. Add 'never' as a testing selection for warm_rain (details / githubweb)
  194. Until we figure out cam6 fw2000X failure only allow hb scheme to be active for cam_dev, backed off from using cam6-hb with this commit (details / githubweb)
  195. update ChangeLog with current test failures (details / githubweb)
  196. Remove never from warm_rain options (details / githubweb)
  197. Update Externals_CAM.cfg to point to PUMAS tag (details / githubweb)
  198. remove duplicate timer calls for prim_advanc_exp (details / githubweb)
  199. use table_interp utility module (details / githubweb)
  200. add configure option rrtmgp_smp; misc cleanup (details / githubweb)
  201. use updated table_interp_mod (details / githubweb)
  202. Additional cleanup (details / githubweb)
  203. Post-merge update to add pbuf argument to GEOS-Chem chem_emissions (details / githubweb)
  204. some of Jesse's change requests (details / githubweb)
  205. Updates to use HEMCO for GEOS-Chem compset (details / githubweb)
  206. Minor cleanup changes (details / githubweb)
  207. change rrtmgp_smp to rrtmgp_gpu; fix SW TOA output vars (details / githubweb)
  208. r8 correction (details / githubweb)
  209. do not extrapolate beyond the edges of the table (details / githubweb)
  210. improve docs and index finder (details / githubweb)
  211. rh2odens parameter (details / githubweb)
  212. PR review mods (details / githubweb)
  213. fix bug caught in PR - erroneous replacement of cam_dev with clubb_do_hb_above (details / githubweb)
  214. Fix memory issue, default PE layout for FMTHIST (details / githubweb)
  215. minor corrections (details / githubweb)
  216. add diagnostic output for fluxes on the RRTMGP grid (details / githubweb)
  217. update rrtmgp external to use local_fix01 (details / githubweb)
  218. minor fixes (details / githubweb)
  219. fix in rrtmgp_driver.F90 for gpu (details / githubweb)
  220. Zero bergso above trop_lev; better PE layouts for ERP tests (details / githubweb)
  221. Adjustments to regression tests (details / githubweb)
  222. restrict log message to masterproc (details / githubweb)
  223. Add derecho support. (details / githubweb)
  224. group default namelist vars by name (details / githubweb)
  225. mixup with getting some PR changes pushed (details / githubweb)
  226. PR requested changes from Cheryl (details / githubweb)
  227. fix serious bug for WACCM-x (details / githubweb)
  228. minor fixes (details / githubweb)
  229. PR related mods - HB now on for cam6 (previously just cam_dev), Changelog testing and description updates, rename clubb_do_hb_above to do_hb_above_clubb, hb control namelist variable moved to phys_control (details / githubweb)
  230. cleanup move of do_hb_clubb_above (details / githubweb)
  231. fixed syntax error in PR mods and added physics_control as changed file to ChangeLog (details / githubweb)
  232. ChangeLog draft (details / githubweb)
  233. ChangeLog update (details / githubweb)
  234. ChangeLog update (details / githubweb)
  235. Change needed to build with most recent updates (details / githubweb)
  236. ChangeLog update (details / githubweb)
  237. cleanup a couple of unused vars (details / githubweb)
  238. Some of Matt's change requests (details / githubweb)
  239. more code reviewers requests (details / githubweb)
  240. specify cloud-borne mmr dimensions in comment (details / githubweb)
  241. impose floor for radsurf (details / githubweb)
  242. restore flag_xyfill for some optics diagnostics (details / githubweb)
  243. update ChangeLog (details / githubweb)
  244. ChangeLog update (details / githubweb)
  245. Remove HEMCO from src/control/cam_comp.F90 (details / githubweb)
  246. Fix how HEMCO is specified in GEOS-Chem compset configuration (details / githubweb)
  247. Use HEMCO config files in Buildconf/camconf when running with GEOS-Chem (details / githubweb)
  248. fix bug for species dependent air (WACCM-x) (details / githubweb)
  249. code for changing PGF formulation in SE (details / githubweb)
  250. Add 60 and 30km ncdata files for analytic ICs w/o topography (details / githubweb)
  251. Update ChangeLog (details / githubweb)
  252. cleanup solar forcing and gas_concs init; bugfix in rrtmgp_inputs (details / githubweb)
  253. merge cam6_3_125 mod to rrtmg/radiation.F90 to rrtmgp (details / githubweb)
  254. mods for compatibility of rrtmgp with cam6_3_125 (details / githubweb)
  255. fix rrtmgp build-namelist mod; add missing _r8 to aerosol code (details / githubweb)
  256. fit bug in previous commit (details / githubweb)
  257. bug in WACCM-x formulation of pgf (details / githubweb)
  258. remove extra ktopcam, ktoprad indices (details / githubweb)
  259. remove unused arg band2gpt (details / githubweb)
  260. Remove unused code in configure and build-namelist (details / githubweb)
  261. Use shr_kind_cl in GEOS-Chem character declarations; remove SPMD cpp defs (details / githubweb)
  262. refactor set_wavenumber_bands (details / githubweb)
  263. Update ChangeLog (details / githubweb)
  264. refactor rrtmgp_set_state (details / githubweb)
  265. Always use ONLY keyword in USE statements (details / githubweb)
  266. refactor modified_cloud_fraction (details / githubweb)
  267. Update src/dynamics/se/dycore/control_mod.F90 (details / githubweb)
  268. bug fix - pmid_day arg should not have levels reversed (details / githubweb)
  269. rename optional arg compare_uppercase; use spmd_utils and mpi_bcast (details / githubweb)
  270. refactor and bug fix in rad_gas_get_vmr (details / githubweb)
  271. Change modal aerosol species name retrieval method (details / githubweb)
  272. code changes from code review (details / githubweb)
  273. refactor rrtmgp_set_aer_sw (details / githubweb)
  274. Add comment and wallclock time to new CARMA tests (details / githubweb)
  275. Update src/physics/cam/vertical_diffusion.F90 (details / githubweb)
  276. fix namelist definition (details / githubweb)
  277. updates to include spun up waccm IC file and allow default value of se_nsplit (details / githubweb)
  278. ChangeLog update (details / githubweb)
  279. refactor sw flux calculation (details / githubweb)
  280. update ChangeLog with regression test results (details / githubweb)
  281. Added aux_pumas test suite, added first attempt at making pumas a valid configure and namelist option for microphysics. Added a test to make sure pumas and mg3 give the same results and it only passes when pumas is set to mg3 in configure right now. More work to do. (details / githubweb)
  282. fix r8 issue in refractive_aerosol_optics_mod (details / githubweb)
  283. refactor setting tsi to fix bug (details / githubweb)
  284. Correct default IC file for QPWmaC6 on ne5np4 grid (details / githubweb)
  285. ChangeLog draft (details / githubweb)
  286. Andrew's changes for more output (details / githubweb)
  287. Found one more MG check (details / githubweb)
  288. ChangeLog update (details / githubweb)
  289. ChangeLog update (details / githubweb)
  290. misc cleanup (details / githubweb)
  291. move files shared by rrtmg and rrtmgp to physics/cam (details / githubweb)
  292. Small change to get new outputs working with older code (details / githubweb)
  293. bugfix for simple models; cleanup in cloud optics code (details / githubweb)
  294. Adding tests for Derecho as well (details / githubweb)
  295. more cleanup in cloud optics code (details / githubweb)
  296. convert wet species to dry before calling cam_thermo_dry_air_update (details / githubweb)
  297. refactor setting cloud_sw object (details / githubweb)
  298. Add non-zero exit code to check for baselines. (details / githubweb)
  299. Bring in test_driver and externals (details / githubweb)
  300. Update HEMCO external (details / githubweb)
  301. Update Externals to new PUMAS tag (details / githubweb)
  302. Use wallclock_limit for derecho walltime. (details / githubweb)
  303. Use wallclock_limit for cheyenne and casper walltime. (details / githubweb)
  304. Add missing character (details / githubweb)
  305. Add definition for MGP test (details / githubweb)
  306. Fix typo in HEMCO tagname (details / githubweb)
  307. Remove python from derecho submits (details / githubweb)
  308. separate accumulated and instantaneous fields (details / githubweb)
  309. remove old cloud optics; refactor setting cloud_sw & aer_sw objects (details / githubweb)
  310. Preliminary ChangeLog (details / githubweb)
  311. fix issue #690 (details / githubweb)
  312. refactor SW treatment of no daylight columns in chunk (details / githubweb)
  313. remove characters in comment (details / githubweb)
  314. Remove ZM microphysics and cleanup for CCPP conversion (details / githubweb)
  315. update buildlib to allow cesm to build fms for shared use. Previously cam was responsible for building libfms (details / githubweb)
  316. minor text updates (details / githubweb)
  317. fix err msg wording for missing libfms library. (details / githubweb)
  318. Small perl bug fix in configure (details / githubweb)
  319. Add missing if statement (details / githubweb)
  320. Remove test which tested zmconv_micro (details / githubweb)
  321. fix for ERP test of fvcubed dycore (details / githubweb)
  322. refactor LW cloud and aerosol optics, flux calc (details / githubweb)
  323. misc cleanup; restore putting Q*dp in pbuf for energy conservation (details / githubweb)
  324. remove some debug output; add error check routine (details / githubweb)
  325. Add code mods needed to work with the latest version of the 'atmospheric_physics' external. (details / githubweb)
  326. Unused code deletion and update setting short-lived species fieldnames (details / githubweb)
  327. Replace 'geopotential_t' calculation with CCPP version for SE and MPAS. (details / githubweb)
  328. Fix bugs needed to work with CCPP geopotential_t routine. (details / githubweb)
  329. Add 'water_species' property to fake const object. (details / githubweb)
  330. Replace SE dry static energy calculation with equivalent CCPP scheme. (details / githubweb)
  331. print out missing file (details / githubweb)
  332. update build for changes to rte-rrtmgp develop branch (details / githubweb)
  333. Fix bugs found during manual testing. (details / githubweb)
  334. fix issue with multiple grids with the same attribute(s) (details / githubweb)
  335. fix bug in lat lon coords, append file type to user-supplied filespec (details / githubweb)
  336. Updated ChangeLog for cam6_3_129 (details / githubweb)
  337. Add script to copy GEOS-Chem config files during case setup (details / githubweb)
  338. Update deposition input file path used for GEOS-Chem (details / githubweb)
  339. Copy GEOS-Chem configuration files from caseroot to run directory (details / githubweb)
  340. Adding new diag history fields and updating some diag names (details / githubweb)
  341. Update Externals for new new pumas tag (details / githubweb)
  342. fixes issue #893 to archive derecho baselines - missed addition from last PR (details / githubweb)
  343. Cheryl code review updates. (details / githubweb)
  344. Add Changelog (details / githubweb)
  345. correct spelling error (details / githubweb)
  346. misc updates (details / githubweb)
  347. remove null() init in pointer declarations for thread safety (details / githubweb)
  348. revert derecho changes to testlist_cam.xml (details / githubweb)
  349. use rga rather (details / githubweb)
  350. include option 3 for pgf_formulation error message (details / githubweb)
  351. namelist changes to match run 51 (details / githubweb)
  352. cloud ice fraction changes for cam_dev (details / githubweb)
  353. Adding micro_mg_vtrms namelist for ppe (details / githubweb)
  354. Update externals to point to pumas tag v1.34 (details / githubweb)
  355. fix restarts (details / githubweb)
  356. another restart bug; update sct tests to reference new filename (details / githubweb)
  357. added namelists for wsub_min_asf, modified namelist defaults to reflect latest tunings (details / githubweb)
  358. swap cam_dev conditional for a new namelist, remove se gamma namelist default (details / githubweb)
  359. fix for sct tests and fix for restart tests that have only one type of history file (details / githubweb)
  360. Reverting changes to support pumas named microphysics and adding back in tests that I thought were a mistake but definately werent (details / githubweb)
  361. Reverting more pumas support that doesn't work yet (details / githubweb)
  362. Oops, missed a bracket (details / githubweb)
  363. update ccs_config external (details / githubweb)
  364. code cleanup (details / githubweb)
  365. modify initialization in cam_dev to match cam (details / githubweb)
  366. Updates to copy GEOS-Chem files to case and then run directory (details / githubweb)
  367. Additional Cheryl code review updates. (details / githubweb)
  368. Change cam case_setup script from bash to python (details / githubweb)
  369. Fix typo in error message (details / githubweb)
  370. Update externals to allow for derecho priority setting (details / githubweb)
  371. address review requests (details / githubweb)
  372. Change namelist based on verbal request from Adam, Cecile and Peter (details / githubweb)
  373. Change PE layout to fix some derecho failures (details / githubweb)
  374. change implementation to static array (details / githubweb)
  375. Add missing 'ncol' bounds to CCPP physics input arguments. (details / githubweb)
  376. Fix failing SPCAM test (details / githubweb)
  377. Update externals to get job_priority setting on derecho (details / githubweb)
  378. Change GEOS-Chem acronym in compset long name from GC to GEOSCHEM (details / githubweb)
  379. Update ChangeLog for cam6_3_131 (details / githubweb)
  380. add units and calendar to time_bounds variable (details / githubweb)
  381. Change GEOS-Chem namelist and its parameter to use geoschem not gc (details / githubweb)
  382. add limits on P and T for FMTHIST (details / githubweb)
  383. Updates for paper, SE grid compatibility, bug fixes (details / githubweb)
  384. ChangeLog for cam6_3_132 (details / githubweb)
  385. fix namelist and cloud optics indexing for waccm (details / githubweb)
  386. Slight formatting updates to GEOS-Chem run log output (details / githubweb)
  387. update ChangeLog (details / githubweb)
  388. update ChangeLog (details / githubweb)
  389. fix for dims with bnds; make field indexing consistent (details / githubweb)
  390. make field indexing consistent; remove satfile file loop (details / githubweb)
  391. replace 1 by ktopcam in a few places for high top models (details / githubweb)
  392. add parameters for split file indices (details / githubweb)
  393. better logging (details / githubweb)
  394. remove unnecessary loop (details / githubweb)
  395. fix indices (details / githubweb)
  396. Update GEOS-Chem external tag to 14.1.2 (details / githubweb)
  397. Remove unnecessary comment about NTHRDS (details / githubweb)
  398. add parameters for sat, restart, and init file indices (details / githubweb)
  399. Modfy calling sequences to allow for removal of zm_common (details / githubweb)
  400. clean up File indexing logic (details / githubweb)
  401. Changes to addres initial review comments (details / githubweb)
  402. add tests; update ChangeLog (details / githubweb)
  403. fix tests (details / githubweb)
  404. Update mpas external to use v8.0.1 (details / githubweb)
  405. Additional code review updates. (details / githubweb)
  406. Switch atmospheric_physics external to the new ESCOMP URL. (details / githubweb)
  407. Rename SE dycore time_mod to dyn_time_mod (details / githubweb)
  408. Rename to se_dyn_time_mod instead of dyn_time_mod (details / githubweb)
  409. Update 'errmsg' strings to be empty for CAM-specific CCPP routines. (details / githubweb)
  410. Update Externals_CAM.cfg to use hash as 14.1.2 matches branch as well (details / githubweb)
  411. Revert "Update Externals_CAM.cfg to use hash as 14.1.2 matches branch as well" (details / githubweb)
  412. Initial ChangeLog (details / githubweb)
  413. Fix dimension error in Kessler 'prec_sed' argument. (details / githubweb)
  414. Remove badly-placed line continuation character. (details / githubweb)
  415. Suggested changes to cam.case_setup.py (details / githubweb)
  416. Fix bug and change error messages in cam.case_setup.py (details / githubweb)
  417. Update ChangeLog. (details / githubweb)
  418. address reviewer comments (details / githubweb)
  419. remove unused variable (details / githubweb)
  420. fix looping range (details / githubweb)
  421. Addressing review comments (details / githubweb)
  422. Remove the FCSD_GC compset (details / githubweb)
  423. Remove NTHRDS overrides for GEOS-Chem (details / githubweb)
  424. Correct namelist file changes in ChangeLog (details / githubweb)
  425. Remove redundant includes of src/hemco in .gitignore (details / githubweb)
  426. logic to add file type flag to right part of hfilename_spec, updates to treat nhtfrq = 1 as instantaneous (details / githubweb)
  427. change time_op value to "point" for instantaneous fields (details / githubweb)
  428. removes svn sparse checkout and uses git sparse checkout for all repos, combine clubb and silhs into clubb (details / githubweb)
  429. add final carrage returns (details / githubweb)
  430. Modify COSP2 checkout to remove un-used directories/files. (details / githubweb)
  431. Fix paths, including a mistake introduced on my end. (details / githubweb)
  432. Exit with warning in build-namelist if hemco_config_file or hemco_diagn_file are specified in user namelist. (details / githubweb)
  433. Fix typo; indent with spaces (details / githubweb)
  434. Update externals to match cesm2_3_alpha16g (details / githubweb)
  435. Update ccs_config external (details / githubweb)
  436. Fix COSP Makefile paths. (details / githubweb)
  437. Split master deposition lists into two: mozart and geoschem (details / githubweb)
  438. Fix failing TMC tests (details / githubweb)
  439. Revert dep_data_file input_pathname to "abs"; use new file for geoschem (details / githubweb)
  440. Update ChangeLog. (details / githubweb)
  441. Update PE layouts for derecho (details / githubweb)
  442. back off ccs_config external (details / githubweb)
  443. Fix failing derecho test (details / githubweb)
  444. Add derecho testing to ChangeLog template (details / githubweb)
  445. Update ChangeLog for cam6_3_136 (details / githubweb)
  446. add namelist control for nstep==0 output (details / githubweb)
  447. aircraft emissions for LT and MT compsets (details / githubweb)
  448. derecho pelayouts for ne30 waccm and camchem (details / githubweb)
  449. more derecho pelayouts changes for waccm(x) and camchem (details / githubweb)
  450. Update description of mpas_cam_coef (details / githubweb)
  451. Set mpas_cam_damping_levels default to 3, update description (details / githubweb)
  452. write nstep0 for tests w/ multiple timesamples per file (details / githubweb)
  453. Default mpas_cam_damping_levels to 0 (details / githubweb)
  454. start ChangeLog entry (details / githubweb)
  455. remove check for "FV only" zonal mean fields (details / githubweb)
  456. Use mpas_cam_damping in F2000climo mpasa480 grid aux_cam test (details / githubweb)
  457. Correct ChangeLog order after merging cam_development (details / githubweb)
  458. Change derecho baselinedir in archive_baselines.sh (details / githubweb)
  459. modify waccmx use case file to only add zonal mean fields for FV (details / githubweb)
  460. remove unneeded lnd files from mpas testmods (details / githubweb)
  461. Update ChangeLog for cam6_3_137 (details / githubweb)
  462. always create instantaneous file; write time-dependent fields to inst. file only (details / githubweb)
  463. address reviewer comments (details / githubweb)
  464. derecho tests and pe layout (details / githubweb)
  465. remove derecho tests; ChangeLog draft (details / githubweb)
  466. ChangeLog update (details / githubweb)
  467. ChangeLog update (details / githubweb)
  468. ChangeLog draft (details / githubweb)
  469. ChangeLog Update (details / githubweb)
  470. ChangeLog update (details / githubweb)
  471. ChangeLog update (details / githubweb)
  472. start ChangeLog for misc PR (details / githubweb)
  473. fix single executable plb test (details / githubweb)
  474. calculate midpoint date and datesec for accumulated file (details / githubweb)
  475. fix sct tests (details / githubweb)
  476. initial changelog (details / githubweb)
  477. update ChangeLog (details / githubweb)
  478. fix several outfld calls (details / githubweb)
  479. fix for SILHS history output (details / githubweb)
  480. update ChangeLog (details / githubweb)
  481. updated changelog (details / githubweb)
  482. write nstep0 from more tests (details / githubweb)
  483. update ChangeLog and ChangeLog_template (details / githubweb)
  484. reduce memory footprint when writing CSLAM IC files (details / githubweb)
  485. Fix for FSCAM (details / githubweb)
  486. Point to updated PUMAS external (details / githubweb)
  487. update ChangeLog (details / githubweb)
  488. check allocate status (details / githubweb)
  489. implement fvm2phys mapping for single tracer (details / githubweb)
  490. Fix compilation error (details / githubweb)
  491. update ChangeLog (details / githubweb)
  492. address some reviewer comments (details / githubweb)
  493. Addressing review comments (details / githubweb)
  494. ChangeLog draft (details / githubweb)
  495. ChangeLog update (details / githubweb)
  496. Add ability to output UGUST variable from coupler. (details / githubweb)
  497. ChangeLog update (details / githubweb)
  498. ChangeLog update (details / githubweb)
  499. Revert to non-answer changing for cam_dev compsets (details / githubweb)
  500. Fixing alignment issues (details / githubweb)
  501. Remove cheyenne testing and make all cheyenne tests be derecho ones (details / githubweb)
  502. Update ChangeLog and remove comment (details / githubweb)
  503. Correct date for cam6_3_144 (details / githubweb)
  504. remove cheyenne from archive_baselines (details / githubweb)
  505. Update CMEPS in Externals.cfg (details / githubweb)
  506. UWM changes to namelist files for new clubb external (details / githubweb)
  507. Increased wallclock time for one test on derecho (details / githubweb)
  508. update cime external (details / githubweb)
  509. Finalize ChangeLog (details / githubweb)
  510. Merged in UWM code changes to clubb_intr (details / githubweb)
  511. UWM updates for SILHS (details / githubweb)
  512. Only pass ncols to ZM routines (details / githubweb)
  513. Point to new CLUBB External (details / githubweb)
  514. Few more small changes from larson-group (details / githubweb)
  515. Update bld/configure (details / githubweb)
  516. Clean up GEOS-Chem code in configure based on suggestions from Brian Easton (details / githubweb)
  517. address final reviewer comments (details / githubweb)
  518. Remove CAM3 test since no longer supported (details / githubweb)
  519. Remove unnecessary changes made for GEOS-Chem; minor bug fix for GNU (details / githubweb)
  520. Add missing ncol declaration (details / githubweb)
  521. science-optimized dycore - stabilize WACCM (details / githubweb)
  522. ChangeLog for cam6_3_146 (details / githubweb)
  523. update RRTMGP externals (details / githubweb)
  524. Addressing some review comments (details / githubweb)
  525. resolve issue #864 (qneg) (details / githubweb)
  526. change default topo file for ne30gp3 (read in PHIS in GLL grid); remove (details / githubweb)
  527. remove ifdef old_cam (details / githubweb)
  528. Revert setting GEOS-Chem $chem_cppdefs to earlier in configure (details / githubweb)
  529. Remove project paths to GEOS-Chem inputs; now stored in inputdata (details / githubweb)
  530. forgot to remove ifndef old_cam (details / githubweb)
  531. remove comment (details / githubweb)
  532. fix previous commit (details / githubweb)
  533. remove ifndef old_cam (details / githubweb)
  534. complete previous commit (details / githubweb)
  535. add changelog message (details / githubweb)
  536. minor modification to changelog (details / githubweb)
  537. Addressing more initial review comments (details / githubweb)
  538. Updated GEOs-Chem tests from cheyenne to derecho (details / githubweb)
  539. Add categories prealpha and aux_cam to all GEOS-Chem compset tests (details / githubweb)
  540. Delete redundant setting of deposition lists in namelists (details / githubweb)
  541. Reduce GEOS-Chem tests to one aux_cam and one prealpha across two compsets (details / githubweb)
  542. Fixed some oopses (details / githubweb)
  543. Change FCnudged_GC derecho test to not use zonal mean nudging (details / githubweb)
  544. address review comments (details / githubweb)
  545. skip over geoschem in r8 kind checker (details / githubweb)
  546. Update Changelog (details / githubweb)
  547. include commit and time limit to goes-chem tests (details / githubweb)
  548. update ChangLog (details / githubweb)
  549. Update topo file path to official inputdata repo path in namelist defaults file. (details / githubweb)
  550. use broadband flux objects for clear-sky calcs (details / githubweb)
  551. address review comments (details / githubweb)
  552. fix filename in namelist defaults file (details / githubweb)
  553. update externals to match alpha17a (details / githubweb)
  554. Remove use of deprecated 'imp' module in python scripts (Github issue #970). (details / githubweb)
  555. address review comments (details / githubweb)
  556. Update cime tag (details / githubweb)
  557. stat check (details / githubweb)
  558. Update src/dynamics/se/dycore/fvm_mapping.F90 (details / githubweb)
  559. change comment (details / githubweb)
  560. minor mod (details / githubweb)
  561. fix compiltation error (details / githubweb)
  562. minor mod (details / githubweb)
  563. Update src/physics/cam/vertical_diffusion.F90 (details / githubweb)
  564. minor clean-up (details / githubweb)
  565. Update src/dynamics/se/dycore/fvm_mapping.F90 (details / githubweb)
  566. Update src/dynamics/se/dycore/fvm_mapping.F90 (details / githubweb)
  567. add comment (details / githubweb)
  568. add comment (details / githubweb)
  569. Update src/dynamics/se/dp_coupling.F90 (details / githubweb)
  570. Update src/dynamics/se/dp_coupling.F90 (details / githubweb)
  571. Update src/dynamics/se/dycore/fvm_mapping.F90 (details / githubweb)
  572. add description (details / githubweb)
  573. simplify code (details / githubweb)
  574. fix (details / githubweb)
  575. fix indentation (details / githubweb)
  576. reduce code length (details / githubweb)
  577. fix compilation error (details / githubweb)
  578. fix dycore budgets (details / githubweb)
  579. address review comments (details / githubweb)
  580. Update TMC test (details / githubweb)
  581. update ChangeLog (details / githubweb)
  582. Fix failing tests (details / githubweb)
  583. Add a couple more prealpha tests (details / githubweb)
  584. Update ChangeLog for cam6_3_149 (details / githubweb)
  585. Add allocation checks and update ChangeLog. (details / githubweb)
  586. changelog updates (details / githubweb)
  587. change allocation size (details / githubweb)
  588. Update namelist settings (details / githubweb)
  589. restructure code (details / githubweb)
  590. Add 'allocated' check for kvm_sponge. (details / githubweb)
  591. Re-add mistakenly deleted if statement. (details / githubweb)
  592. Don't allocate kvm_sponge if it is not being used. (details / githubweb)
  593. fv3 updates to bring in more current fms tag. Created fv3 interface directory brought in as an external which points back to GFDL to get the fv3 library code (details / githubweb)
  594. Remove obsolete file README_EXTERNALS (details / githubweb)
  595. ChangeLog updates (details / githubweb)
  596. Fix syntax error found during testing. (details / githubweb)
  597. namelist_default not setting WACCM-x variables correctly since (details / githubweb)
  598. Convert CLUBB error locations from rad to degrees (details / githubweb)
  599. Update hist list for subcolumns and add clubb_diags test output to mg3 test defs (details / githubweb)
  600. Addressing review comments (details / githubweb)
  601. fix so that all three flavors of intel compiler are recognized on derecho (details / githubweb)
  602. Split wind variable into two variables (details / githubweb)
  603. Rename directory to zhang_mcfarlane (details / githubweb)
  604. Put back in namelist logging (details / githubweb)
  605. Remove jctop, jcbot from zm_convr_run calling list (details / githubweb)
  606. Remove unused pflx variable and set placeholder tag for atmospheric_physics external (details / githubweb)
  607. Update U10 to be resolved wind; add variable for U10+gusts (details / githubweb)
  608. Move a couple of outfld calls (details / githubweb)
  609. fix restart issue (details / githubweb)
  610. Use lapack routine to solve matrix eq for E-field boundary calc (details / githubweb)
  611. save memory by dynamic allocation of elem% variables (details / githubweb)
  612. Separate four additional wind variables (details / githubweb)
  613. init ipiv with integer 0 (details / githubweb)
  614. changes for nag nan test (details / githubweb)
  615. fix issue with sd_waccmx_ma_cam6 use case (details / githubweb)
  616. Fix allocation errors found during testing. (details / githubweb)
  617. fix to allow multiple monthly avg history files (details / githubweb)
  618. start ChangeLog entry (details / githubweb)
  619. update ChangeLog (details / githubweb)
  620. Fix typo (details / githubweb)
  621. fix bug on sponge settings for WACCM (details / githubweb)
  622. code cleanup for O2 abs cross sections (details / githubweb)
  623. add one more location for setting of dust_emis_fact with SE dycore (details / githubweb)
  624. Update FADIAB test to use ne5pg3 grid, and finalize ChangeLog. (details / githubweb)
  625. Update ChangeLog for cam6_3_153 (details / githubweb)
  626. Small bug fix (details / githubweb)
  627. Update CMEPS to get U10 changes and CDEPS needed to work with that version of CMEPS (details / githubweb)
  628. CLUBB diagnostics test update plus addressing Adams review (details / githubweb)
  629. Remove threadprivate calls for stats (not needed) (details / githubweb)
  630. Update testlist to include a threaded FV test (details / githubweb)
  631. Address review comments (details / githubweb)
  632. Rainbows testing added to aux_pumas tests, not aux_cam (details / githubweb)
  633. Update CMEPS and CDEPS to latest tags (details / githubweb)
  634. Update CMEPS for bugfix for NAG (details / githubweb)
  635. Update ChangeLog for cam6_3_154 (details / githubweb)
  636. New threaded test hitting wallclock limit in aux_cam suite. Increased limit (details / githubweb)
  637. Update ChangeLog (details / githubweb)
  638. minor changes (details / githubweb)
  639. rename limit params (details / githubweb)
  640. Address reviewer comments (details / githubweb)
  641. use case sd_waccmx_ma_cam6 change for waccm_mad_mam5 chem (details / githubweb)
  642. ChangeLog draft (details / githubweb)
  643. PR requested updates (details / githubweb)
  644. ChangeLog update (details / githubweb)
  645. ChangeLog update (details / githubweb)
  646. small correction in comment (details / githubweb)
  647. Update external (details / githubweb)
  648. [ 50 character, one line summary ] (details / githubweb)
  649. Update to new PUMAS tag (fix gpu bugs) (details / githubweb)
  650. Update cime external (details / githubweb)
  651. New ccs_config tag needed for GPU fixes (details / githubweb)
  652. Update to newer cime tag (details / githubweb)
  653. Fix gitignore for FV3 (details / githubweb)
  654. Address Cheryls review comments (details / githubweb)
  655. Add ChangeLog for cam6_3_158 (details / githubweb)
  656. Changes to work with subcolumns and scm (details / githubweb)
  657. Update prealpha suite to include problematic test (details / githubweb)
  658. Update ChangeLog (details / githubweb)
  659. Revert to support UWM build structure (details / githubweb)

Started by user Gunther Huebler

Revision: 3f9d8c17f2480940da2674673b95b8764c157206
Repository: https://github.com/larson-group/cam.git
  • refs/remotes/origin/clubb_silhs_devel