Started by an SCM change Obtained jenkins_tests/cam_clubb_generalized_grid_scam_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 32e7d4adf103e76b7fe05242a69588eb5a6fa296 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 32e7d4adf103e76b7fe05242a69588eb5a6fa296 # timeout=10 Commit message: "Autoupdated SILHS Commit def788b540d3bf4995b1deefeb077e198906f158 Author: Gunther Huebler Date: Wed Oct 1 17:36:25 2025 -0500 Making the l_random_k_lh_start set the random generator seed before generating a random. This should fix the generalized grid test, which failed for the only flag set that turned on l_random_k_lh_start. Before, the test passed because we used the same random seed for all timesteps, preventing differences in the random call. But now we use a different seed each timestep, causing differences. To ensure reproducibility, we use the seed each timestep to generate rand_pool, which is an effective solution, but we need to do that for the rand_integer_in_range call in the l_random_k_lh_start code for the same reason. Since this does change the random that comes out, this is BIT_CHANGING, but only for runs using both SILHS and l_random_k_lh_start=.true." > git rev-list --no-walk 1be51d053905fea48cebe2371a516e113a496312 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97 [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_ascending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97_ascending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_descending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97_descending [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Generalized Grid Test for ATEX and ARM97 with SILHS) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + run_scripts/run_generalized_grid_scam_test.bash ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-844-g32e7d4adf Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-10-02 03:06:59 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-10-02 03:06:59 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:06:59 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:06:59 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:06:59 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:06:59 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:06:59 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:06:59 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:06:59 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.251002-030658 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.251002-030658 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.251002-030658 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.251002-030658 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.251002-030658 Component lnd build complete with 2468 warnings clm built in 45.311301 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.251002-030658 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.251002-030658 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.251002-030658 docn built in 0.844072 seconds Component ice build complete with 384 warnings cice built in 78.318710 seconds Component atm build complete with 5515 warnings cam built in 80.340430 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.251002-030658 Component cesm exe build complete with 49 warnings Total build time: 203.123634 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-10-02 03:10:22 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-10-02 03:10:22 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:10:23 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:10:23 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:10:23 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:10:23 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:10:23 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:10:23 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:10:23 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX 2025-10-02 03:10:24 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-10-02 03:10:24 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:10:24 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:10:25 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:10:25 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:10:25 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:10:25 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:10:25 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:10:25 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is STOP_N and value is 695 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-844-g32e7d4adf Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 sharedlib_only is False model_only is False Generating component namelists as part of build 2025-10-02 03:10:45 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-10-02 03:10:46 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:10:46 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:10:46 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:10:46 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:10:46 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:10:46 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:10:46 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:10:46 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.251002-031045 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.251002-031045 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.251002-031045 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.251002-031045 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.251002-031045 Component lnd build complete with 2468 warnings clm built in 48.473258 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.251002-031045 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.251002-031045 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.251002-031045 docn built in 0.879419 seconds Component ice build complete with 384 warnings cice built in 76.510561 seconds Component atm build complete with 5525 warnings cam built in 77.688818 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.251002-031045 Component cesm exe build complete with 49 warnings Total build time: 203.259457 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-10-02 03:14:09 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-10-02 03:14:09 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:14:09 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:14:10 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:14:10 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:14:10 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:14:10 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:14:10 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:14:10 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 2025-10-02 03:14:11 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-10-02 03:14:11 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:14:11 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:14:12 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:14:12 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:14:12 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:14:12 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:14:12 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:14:12 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-844-g32e7d4adf Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-10-02 03:17:50 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-10-02 03:17:50 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:17:50 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:17:50 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:17:51 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:17:51 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:17:51 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:17:51 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:17:51 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.251002-031750 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.251002-031750 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.251002-031750 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.251002-031750 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.251002-031750 Component lnd build complete with 2468 warnings clm built in 59.564059 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.251002-031750 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.251002-031750 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.251002-031750 docn built in 0.848919 seconds Component ice build complete with 384 warnings cice built in 80.694001 seconds Component atm build complete with 5515 warnings cam built in 81.349070 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.251002-031750 Component cesm exe build complete with 49 warnings Total build time: 223.655057 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-10-02 03:21:34 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-10-02 03:21:34 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:21:34 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:21:34 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:21:34 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:21:34 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:21:34 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:21:34 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:21:34 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX 2025-10-02 03:21:36 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-10-02 03:21:36 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:21:36 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:21:36 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:21:36 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:21:36 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:21:36 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:21:36 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:21:36 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is STOP_N and value is 695 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-844-g32e7d4adf Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 sharedlib_only is False model_only is False Generating component namelists as part of build 2025-10-02 03:21:56 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-10-02 03:21:57 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:21:57 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:21:57 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:21:57 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:21:57 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:21:57 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:21:57 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:21:57 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.251002-032156 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.251002-032156 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.251002-032156 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.251002-032156 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.251002-032156 Component lnd build complete with 2468 warnings clm built in 47.474441 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.251002-032156 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.251002-032156 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.251002-032156 docn built in 0.820781 seconds Component ice build complete with 384 warnings cice built in 80.204587 seconds Component atm build complete with 5525 warnings cam built in 82.008547 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.251002-032156 Component cesm exe build complete with 49 warnings Total build time: 207.191653 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-10-02 03:25:24 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-10-02 03:25:24 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:25:24 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:25:24 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:25:24 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:25:24 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:25:24 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:25:24 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:25:24 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 2025-10-02 03:25:26 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-10-02 03:25:26 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-10-02 03:25:26 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-10-02 03:25:26 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-10-02 03:25:26 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-10-02 03:25:26 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-10-02 03:25:26 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-10-02 03:25:26 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-10-02 03:25:26 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! There were no differences detected! [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS