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_class='hudson.plugins.git.GitChangeSet'><affectedPath>model_flags.F90</affectedPath><affectedPath>remapping.F90</affectedPath><affectedPath>constants_clubb.F90</affectedPath><affectedPath>output_netcdf.F90</affectedPath><affectedPath>interpolation.F90</affectedPath><affectedPath>stats_variables.F90</affectedPath><affectedPath>stats_clubb_utilities.F90</affectedPath><affectedPath>stats_zm_module.F90</affectedPath><affectedPath>grid_adaptation.F90</affectedPath><commitId>b558b034dae7a6c45872fe3f91ac6e163472eaaa</commitId><timestamp>1747866722000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Merge grid adaptation implementation (#1249)

* add tunable parameter interp_from_dycore_grid_method

* add dycore interpolation to atex case with conservative remapping by ullrich

* remove new gpu commands

* add acc annotation for gpu

* remove acc annotation again

* add acc annotation for parallel loop

* add acc annotations for parallel loop execution

* change remapping subroutine to take number of levels and levels as input instead of whole grid object

* add more general functions to interpolate

* add and refactor functions for remapping values given on zm levels

* fix compiler errors and refactoring to stay under 100 chars per line

* remove TODOs and used new interpolating function in interpolate_forcings

* add functions for adaptive grid generation and grid density function normalization

* add conservative ullrich remapping to cases with forcing time dependent inputs

* add grid adaptation and flag

* clean up and add warning for case when remapping from dycore flag cannot be used

* some refactoring

* add logical flag for dycore and renamed flags for dycore and grid adaptation

* remove ifdefs

* refactoring

* add units

* changed Lscale to inverse

* add write to file for grid adaptation (still WIP)

* clean up

* change parameter for grid adaptation and add file and plot script for grid adaptation

* add script for animation

* add e3sm dycore grid

* refactoring for efficiency

* small fix for grid adapt plot script

* add new grid adaptation method with prescribed minimum density profile

* fix call to setup_grid

* add gabls2 case

* add refinement criterion and adaptation trigger

* small fix and add minimum grid density profile to animation

* add grid density to pyplots

* add general refinement criteria for astex and gabls2 case (and arm)

* update create_evenly_grid script

* unfinished save

* WIP: save progress

* save working configuration

* save working config without Lscale

* save working config wo the use of Lscale

* change call to map1_ppm to use correct iv parameter and order 4

* save code for results in thesis

* add code for results

* refactor remapping module for grid adaptation

* add list of functions/subroutines to remapping module

* adjust use statements

* add model files for arm, astex and gabls2

* refactor grid_adaptation module

* refactor and adjust tim stopping in clubb_driver

* clean up

* clean up

* add grids

* add scripts

* add changes made to pyplotgen to generate plots for paper

* add configurable model flags file that was used to obtain results

* clean up and save tunable parameters file

* fix error

* fix error

* add grid adapt output for debug level 2

* change dycore grid

* add plot generation script for paper plots

* add small changes

* add normalization explaination plot to paper plots script

* fix plot

* clean up for stats output

* add comment

* fix use of clubb_at_least_debug_api

* small deallocation fix

* fix merge problems

* revert changes made to test grid adaptation

* revert tunable_parameters for Lscale

* revert changes made to create plots for grid adaptation

* add new line

* add new line

* revert changes

* revert changes made to generate grid adaptation plots
</comment><date>2025-05-21 17:32:02 -0500</date><id>b558b034dae7a6c45872fe3f91ac6e163472eaaa</id><msg>Merge grid adaptation implementation (#1249)</msg><path><editType>edit</editType><file>grid_adaptation.F90</file></path><path><editType>edit</editType><file>model_flags.F90</file></path><path><editType>edit</editType><file>output_netcdf.F90</file></path><path><editType>edit</editType><file>constants_clubb.F90</file></path><path><editType>edit</editType><file>interpolation.F90</file></path><path><editType>edit</editType><file>stats_variables.F90</file></path><path><editType>add</editType><file>remapping.F90</file></path><path><editType>edit</editType><file>stats_clubb_utilities.F90</file></path><path><editType>edit</editType><file>stats_zm_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName><id>noreply</id></culprit><inProgress>false</inProgress><nextBuild><action _class='hudson.model.CauseAction'><cause _class='hudson.model.Cause$UserIdCause'><shortDescription>Started by user Brian Griffin</shortDescription><userId>griffinb</userId><userName>Brian Griffin</userName></cause></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginclubb_silhs_devel _class='hudson.plugins.git.util.Build'><buildNumber>6</buildNumber><marked><SHA1>e5ec9afb7da53442bdee3952105faf142b9c3007</SHA1><branch><SHA1>e5ec9afb7da53442bdee3952105faf142b9c3007</SHA1><name>refs/remotes/origin/clubb_silhs_devel</name></branch></marked><revision><SHA1>e5ec9afb7da53442bdee3952105faf142b9c3007</SHA1><branch><SHA1>e5ec9afb7da53442bdee3952105faf142b9c3007</SHA1><name>refs/remotes/origin/clubb_silhs_devel</name></branch></revision></refsremotesoriginclubb_silhs_devel></buildsByBranchName><lastBuiltRevision><SHA1>e5ec9afb7da53442bdee3952105faf142b9c3007</SHA1><branch><SHA1>e5ec9afb7da53442bdee3952105faf142b9c3007</SHA1><name>refs/remotes/origin/clubb_silhs_devel</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/cam.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#6</displayName><duration>1563243</duration><estimatedDuration>1642148</estimatedDuration><fullDisplayName>cam_clubb_generalized_grid_scam_test #6</fullDisplayName><id>6</id><keepLog>false</keepLog><number>6</number><queueId>10268</queueId><result>SUCCESS</result><timestamp>1747957990527</timestamp><url>http://carson.math.uwm.edu/jenkins/job/cam_clubb_generalized_grid_scam_test/6/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/physics/cam/clubb_intr.F90</affectedPath><commitId>f3e4feee74e7ead32bdc9e6373c1217b7dbb5e3c</commitId><timestamp>1747956100000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I've got the magic fix
I know if I can fix it once, I can fix twice
I fix the baddest bugs ...

Changing the pbuf_get_field calls to only go from 1 to ncol in the
column dimension for the variables that are newly being passed
directly into advance_clubb_core_api thanks to our removal of
the _in variables (e.g. wp2_in) in a recent commit. This solves
the problem of trying to shove a (pverp-top_lev+1 x pcols) size
box into the hole for a (pverp-top_lev+1 x ncol) size box.

G-UNIT!!!
</comment><date>2025-05-22 18:21:40 -0500</date><id>f3e4feee74e7ead32bdc9e6373c1217b7dbb5e3c</id><msg>I've got the magic fix</msg><path><editType>edit</editType><file>src/physics/cam/clubb_intr.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>7</number><url>http://carson.math.uwm.edu/jenkins/job/cam_clubb_generalized_grid_scam_test/7/</url></nextBuild><previousBuild><number>5</number><url>http://carson.math.uwm.edu/jenkins/job/cam_clubb_generalized_grid_scam_test/5/</url></previousBuild></nextBuild><previousBuild><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginclubb_silhs_devel _class='hudson.plugins.git.util.Build'><buildNumber>4</buildNumber><marked><SHA1>154fe0431dc356aebf5c39550a0b8c8a9b05e597</SHA1><branch><SHA1>154fe0431dc356aebf5c39550a0b8c8a9b05e597</SHA1><name>refs/remotes/origin/clubb_silhs_devel</name></branch></marked><revision><SHA1>154fe0431dc356aebf5c39550a0b8c8a9b05e597</SHA1><branch><SHA1>154fe0431dc356aebf5c39550a0b8c8a9b05e597</SHA1><name>refs/remotes/origin/clubb_silhs_devel</name></branch></revision></refsremotesoriginclubb_silhs_devel></buildsByBranchName><lastBuiltRevision><SHA1>154fe0431dc356aebf5c39550a0b8c8a9b05e597</SHA1><branch><SHA1>154fe0431dc356aebf5c39550a0b8c8a9b05e597</SHA1><name>refs/remotes/origin/clubb_silhs_devel</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/cam.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#4</displayName><duration>1490406</duration><estimatedDuration>1642148</estimatedDuration><fullDisplayName>cam_clubb_generalized_grid_scam_test #4</fullDisplayName><id>4</id><keepLog>false</keepLog><number>4</number><queueId>10094</queueId><result>SUCCESS</result><timestamp>1747814709641</timestamp><url>http://carson.math.uwm.edu/jenkins/job/cam_clubb_generalized_grid_scam_test/4/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_xm_wpxp_module.F90</affectedPath><commitId>a1ccb74c23ed0ba31458eab3cd2101a82c39dcf3</commitId><timestamp>1747720486000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>zm and zt were mixed up in the error prints argument list.
</comment><date>2025-05-20 00:54:46 -0500</date><id>a1ccb74c23ed0ba31458eab3cd2101a82c39dcf3</id><msg>zm and zt were mixed up in the error prints argument list.</msg><path><editType>edit</editType><file>advance_xm_wpxp_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></culprit><inProgress>false</inProgress><nextBuild><number>5</number><url>http://carson.math.uwm.edu/jenkins/job/cam_clubb_generalized_grid_scam_test/5/</url></nextBuild><previousBuild><number>3</number><url>http://carson.math.uwm.edu/jenkins/job/cam_clubb_generalized_grid_scam_test/3/</url></previousBuild></previousBuild></workflowRun>