Started by an SCM change
Obtained jenkins_tests/cam_clubb_generalized_grid_scam_test/Jenkinsfile from git <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git init /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 0a7b056e7e3fb54e702de4e1ea97494a9fff85a9 (refs/remotes/origin/clubb_silhs_devel)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 0a7b056e7e3fb54e702de4e1ea97494a9fff85a9 # timeout=10
Commit message: "Bug fix to dimensions that was causing crashes. This is technically BIT_CHANGING."
 &gt; git rev-list --no-walk 5afa946afdb36ccab6009d735fd59a243a881f43 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Checkout Externals and Copy Custom Files">[Pipeline] { (Checkout Externals and Copy Custom Files)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ python run_scripts/set_up_repo.py .
Checking out externals...
Copying ccs_config files
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Remove Old Output">[Pipeline] { (Remove Old Output)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX
</span><span class="pipeline-new-node" nodeId="20" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-20">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97
</span><span class="pipeline-new-node" nodeId="21" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-21">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_ascending
</span><span class="pipeline-new-node" nodeId="22" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-22">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97_ascending
</span><span class="pipeline-new-node" nodeId="23" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-23">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_descending
</span><span class="pipeline-new-node" nodeId="24" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-24">+ rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97_descending
</span><span class="pipeline-new-node" nodeId="25" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="26" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="27" startId="27" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="28" startId="28" enclosingId="27" label="Run Generalized Grid Test for ATEX and ARM97 with SILHS">[Pipeline] { (Run Generalized Grid Test for ATEX and ARM97 with SILHS)
</span><span class="pipeline-new-node" nodeId="29" enclosingId="28">[Pipeline] sh
</span><span class="pipeline-node-29">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ ulimit -s 8388608
+ run_scripts/run_generalized_grid_scam_test.bash
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15
Compset specific settings: name is STOP_N and value is 47
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 0
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 15.0
Compset specific settings: name is PTS_LON and value is 345.0
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid          is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
Pes setting: compset       is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
 Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] 

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-817-g0a7b056e
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands
FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2025-05-20 03:07:04 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-20 03:07:04 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:07:04 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:07:05 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:07:05 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:07:05 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:07:05 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:07:05 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:07:05 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250520-030704
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250520-030704
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250520-030704
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share
Component csm_share build complete with 246 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250520-030704
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 176 warnings
         - Building clm library 
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250520-030704
Component lnd build complete with 2468 warnings
clm built in 49.291093 seconds
         - Building atm Library 
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250520-030704
         - Building ice Library 
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250520-030704
         - Building ocn Library 
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250520-030704
docn built in 0.859561 seconds
Component ice build complete with 384 warnings
cice built in 80.953010 seconds
Component atm build complete with 5507 warnings
cam built in 84.902179 seconds
Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250520-030704 
Component cesm exe build complete with 49 warnings
Total build time: 216.649357 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
  2025-05-20 03:10:41 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-20 03:10:41 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:10:41 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:10:42 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:10:42 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:10:42 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:10:42 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:10:42 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:10:42 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
  2025-05-20 03:10:43 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-20 03:10:43 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:10:43 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:10:43 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:10:43 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:10:43 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:10:43 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:10:43 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:10:43 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
 - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run
 - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata 
 - Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun  -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe   &gt;&gt; cesm.log.$LID 2&gt;&amp;1  
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
Submitted job case.run with id None
Success!
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18
Compset specific settings: name is STOP_N and value is 695
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 84585
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 36.6
Compset specific settings: name is PTS_LON and value is 262.5
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid          is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
Pes setting: compset       is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
 Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] 

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-817-g0a7b056e
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands
FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2025-05-20 03:11:05 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 
  2025-05-20 03:11:05 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:11:05 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:11:05 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:11:05 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:11:05 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:11:05 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:11:05 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:11:05 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.250520-031104
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.250520-031104
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.250520-031104
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share
Component csm_share build complete with 246 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.250520-031104
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 176 warnings
         - Building clm library 
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.250520-031104
Component lnd build complete with 2468 warnings
clm built in 48.723035 seconds
         - Building atm Library 
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.250520-031104
         - Building ice Library 
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.250520-031104
         - Building ocn Library 
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.250520-031104
docn built in 0.814946 seconds
Component ice build complete with 384 warnings
cice built in 85.779510 seconds
Component atm build complete with 5517 warnings
cam built in 87.037478 seconds
Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.250520-031104 
Component cesm exe build complete with 49 warnings
Total build time: 217.969875 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
  2025-05-20 03:14:43 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 
  2025-05-20 03:14:43 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:14:43 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:14:44 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:14:44 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:14:44 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:14:44 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:14:44 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:14:44 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
  2025-05-20 03:14:45 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 
  2025-05-20 03:14:45 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:14:45 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:14:45 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:14:45 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:14:45 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:14:45 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:14:45 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:14:45 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
 - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run
 - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata 
 - Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun  -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe   &gt;&gt; cesm.log.$LID 2&gt;&amp;1  
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
Submitted job case.run with id None
Success!
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15
Compset specific settings: name is STOP_N and value is 47
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 0
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 15.0
Compset specific settings: name is PTS_LON and value is 345.0
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid          is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
Pes setting: compset       is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
 Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] 

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-817-g0a7b056e
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands
FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2025-05-20 03:18:34 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-20 03:18:35 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:18:35 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:18:35 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:18:35 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:18:35 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:18:35 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:18:35 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:18:35 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250520-031834
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250520-031834
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250520-031834
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share
Component csm_share build complete with 246 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250520-031834
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 176 warnings
         - Building clm library 
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250520-031834
Component lnd build complete with 2468 warnings
clm built in 48.370690 seconds
         - Building atm Library 
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250520-031834
         - Building ice Library 
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250520-031834
         - Building ocn Library 
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250520-031834
docn built in 0.866780 seconds
Component ice build complete with 384 warnings
cice built in 82.832277 seconds
Component atm build complete with 5507 warnings
cam built in 83.708679 seconds
Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250520-031834 
Component cesm exe build complete with 49 warnings
Total build time: 211.546588 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
  2025-05-20 03:22:06 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-20 03:22:07 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:22:07 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:22:07 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:22:07 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:22:07 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:22:07 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:22:07 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:22:07 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
  2025-05-20 03:22:08 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 
  2025-05-20 03:22:08 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:22:08 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:22:09 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:22:09 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:22:09 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:22:09 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:22:09 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:22:09 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
 - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run
 - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata 
 - Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun  -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe   &gt;&gt; cesm.log.$LID 2&gt;&amp;1  
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
Submitted job case.run with id None
Success!
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN   prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes     specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18
Compset specific settings: name is STOP_N and value is 695
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 84585
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 36.6
Compset specific settings: name is PTS_LON and value is 262.5
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid          is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
Pes setting: compset       is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
Pes setting: tasks       is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} 
Pes setting: threads     is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} 
Pes setting: rootpe      is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} 
Pes setting: pstrid      is {} 
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
 Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP 
 Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 
 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] 

This is a CESM scientifically supported compset at this resolution.

No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-817-g0a7b056e
Batch_system_type is none
 Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands
FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
sharedlib_only is False
model_only is False
Generating component namelists as part of build
  2025-05-20 03:22:29 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
     ...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 
  2025-05-20 03:22:30 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:22:30 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:22:30 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:22:30 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:22:30 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:22:30 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:22:30 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:22:30 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.250520-032229
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.250520-032229
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.250520-032229
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share
Component csm_share build complete with 246 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.250520-032229
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 176 warnings
         - Building clm library 
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.250520-032229
Component lnd build complete with 2468 warnings
clm built in 45.889140 seconds
         - Building atm Library 
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.250520-032229
         - Building ice Library 
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.250520-032229
         - Building ocn Library 
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.250520-032229
docn built in 0.841889 seconds
Component ice build complete with 384 warnings
cice built in 80.920579 seconds
Component atm build complete with 5517 warnings
cam built in 82.245877 seconds
Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.250520-032229 
Component cesm exe build complete with 49 warnings
Total build time: 208.541737 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
  2025-05-20 03:25:58 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 
  2025-05-20 03:25:58 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:25:59 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:25:59 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:25:59 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:25:59 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:25:59 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:25:59 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:25:59 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
  2025-05-20 03:26:00 atm 
Create namelist for component cam
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 
  2025-05-20 03:26:00 lnd 
Create namelist for component clm
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
  2025-05-20 03:26:00 ice 
Create namelist for component cice
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
  2025-05-20 03:26:00 ocn 
Create namelist for component docn
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
  2025-05-20 03:26:00 rof 
Create namelist for component srof
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
  2025-05-20 03:26:00 glc 
Create namelist for component sglc
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
  2025-05-20 03:26:00 wav 
Create namelist for component swav
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
  2025-05-20 03:26:00 esp 
Create namelist for component sesp
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
  2025-05-20 03:26:00 cpl 
Create namelist for component drv
   Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
 - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run
 - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata 
 - Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun  -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe   &gt;&gt; cesm.log.$LID 2&gt;&amp;1  
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
Submitted job case.run with id None
Success!

There were no differences detected!
</span><span class="pipeline-new-node" nodeId="30" startId="28">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="31" startId="27">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="32" startId="32" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="33" startId="33" enclosingId="32" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="34" startId="34" enclosingId="33">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="35" startId="35" enclosingId="34">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="36" enclosingId="35">[Pipeline] cleanWs
</span><span class="pipeline-node-36">[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
</span><span class="pipeline-new-node" nodeId="37" startId="35">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="38" startId="34">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="39" startId="33">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="40" startId="32">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="41" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="42" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="43" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="44" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="45" startId="2">[Pipeline] End of Pipeline
</span>Finished: SUCCESS