Started by an SCM change Obtained jenkins_tests/cam_clubb_generalized_grid_scam_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision e94d063b32865a628aea8b86ae7a394883932653 (refs/remotes/origin/clubb_silhs_devel) > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f e94d063b32865a628aea8b86ae7a394883932653 # timeout=10 Commit message: "Autoupdated CLUBB_core Commit 4aa7da34e62d33f881f92c049f1060250a818a7a Author: st3113n Date: Fri Sep 26 19:37:14 2025 +0200 Remove module vars from grid_adaptation_module (#1255) * removed fixed_min_gr_dens module variables" > git rev-list --no-walk e6a8375659be8bb0f6850a8d0170d5834dc51f20 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97 [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_ascending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97_ascending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_descending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97_descending [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Generalized Grid Test for ATEX and ARM97 with SILHS) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + run_scripts/run_generalized_grid_scam_test.bash ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-838-ge94d063b3 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-09-27 03:07:08 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-09-27 03:07:08 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:07:08 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:07:08 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:07:08 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:07:08 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:07:08 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:07:08 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:07:08 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250927-030707 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250927-030707 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250927-030707 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250927-030707 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250927-030707 Component lnd build complete with 2468 warnings clm built in 54.172469 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250927-030707 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250927-030707 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250927-030707 docn built in 0.449668 seconds Component ice build complete with 384 warnings cice built in 101.848053 seconds Component atm build complete with 5515 warnings cam built in 112.095521 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250927-030707 Component cesm exe build complete with 49 warnings Total build time: 237.769915 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-09-27 03:11:06 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-09-27 03:11:06 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:11:06 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:11:06 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:11:06 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:11:06 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:11:06 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:11:06 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:11:06 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX 2025-09-27 03:11:07 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-09-27 03:11:07 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:11:08 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:11:08 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:11:08 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:11:08 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:11:08 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:11:08 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:11:08 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is STOP_N and value is 695 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-838-ge94d063b3 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 sharedlib_only is False model_only is False Generating component namelists as part of build 2025-09-27 03:11:24 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-09-27 03:11:24 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:11:25 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:11:25 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:11:25 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:11:25 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:11:25 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:11:25 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:11:25 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.250927-031124 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.250927-031124 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.250927-031124 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.250927-031124 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.250927-031124 Component lnd build complete with 2468 warnings clm built in 54.257220 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.250927-031124 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.250927-031124 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.250927-031124 docn built in 0.400398 seconds Component ice build complete with 384 warnings cice built in 90.102217 seconds Component atm build complete with 5525 warnings cam built in 124.225093 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.250927-031124 Component cesm exe build complete with 49 warnings Total build time: 250.537504 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-09-27 03:15:35 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-09-27 03:15:35 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:15:35 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:15:36 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:15:36 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:15:36 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:15:36 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:15:36 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:15:36 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 2025-09-27 03:15:37 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-09-27 03:15:37 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:15:37 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:15:37 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:15:37 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:15:37 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:15:37 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:15:37 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:15:37 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-838-ge94d063b3 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-09-27 03:18:36 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-09-27 03:18:37 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:18:37 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:18:37 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:18:37 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:18:37 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:18:37 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:18:37 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:18:37 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250927-031836 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250927-031836 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250927-031836 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250927-031836 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250927-031836 Component lnd build complete with 2468 warnings clm built in 54.087925 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250927-031836 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250927-031836 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250927-031836 docn built in 0.475858 seconds Component ice build complete with 384 warnings cice built in 106.070947 seconds Component atm build complete with 5515 warnings cam built in 109.249282 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250927-031836 Component cesm exe build complete with 49 warnings Total build time: 234.852500 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-09-27 03:22:31 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-09-27 03:22:32 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:22:32 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:22:32 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:22:32 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:22:32 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:22:32 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:22:32 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:22:32 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX 2025-09-27 03:22:33 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-09-27 03:22:33 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:22:33 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:22:33 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:22:33 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:22:33 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:22:33 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:22:33 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:22:33 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is STOP_N and value is 695 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-838-ge94d063b3 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 sharedlib_only is False model_only is False Generating component namelists as part of build 2025-09-27 03:22:50 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-09-27 03:22:50 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:22:50 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:22:50 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:22:50 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:22:50 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:22:50 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:22:50 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:22:50 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.250927-032250 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.250927-032250 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.250927-032250 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.250927-032250 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.250927-032250 Component lnd build complete with 2468 warnings clm built in 53.271597 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.250927-032250 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.250927-032250 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.250927-032250 docn built in 0.480134 seconds Component ice build complete with 384 warnings cice built in 103.679956 seconds Component atm build complete with 5525 warnings cam built in 115.204121 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.250927-032250 Component cesm exe build complete with 49 warnings Total build time: 240.181000 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-09-27 03:26:50 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-09-27 03:26:50 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:26:51 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:26:51 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:26:51 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:26:51 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:26:51 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:26:51 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:26:51 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 2025-09-27 03:26:52 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-09-27 03:26:52 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-09-27 03:26:52 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-09-27 03:26:52 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-09-27 03:26:52 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-09-27 03:26:52 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-09-27 03:26:52 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-09-27 03:26:52 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-09-27 03:26:52 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! There were no differences detected! [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS