Started by an SCM change Obtained jenkins_tests/cam_clubb_error_handling_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on mitch in /home/jenkins/workspace/cam_clubb_error_handling_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_clubb_error_handling_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 294f7921fa437e0b541244f89b96a679d039d4ba (refs/remotes/origin/clubb_silhs_devel) > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 294f7921fa437e0b541244f89b96a679d039d4ba # timeout=10 Commit message: "Autoupdated CLUBB_core Commit 003b6cf728915e52cba23dc54bd3ae5ea9ee6364 Author: st3113n Date: Thu May 22 20:25:09 2025 -0500 add fix for grid generalization" > git rev-list --no-walk e5ec9afb7da53442bdee3952105faf142b9c3007 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Sed Commands) [Pipeline] sh + sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97 [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run test script) [Pipeline] dir Running in /home/jenkins/workspace/cam_clubb_error_handling_test/jenkins_tests/cam_clubb_error_handling_test [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ./cam_test_fatal_error_handling.bash ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-827-g294f7921 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-23 03:52:02 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:52:02 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:52:03 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cice//cime_config/buildnml 2025-05-23 03:52:03 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:52:03 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:52:03 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:52:03 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:52:03 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:52:03 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250523-035202 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250523-035202 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250523-035202 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/share/buildlib.csm_share Component csm_share build complete with 28 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250523-035202 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250523-035202 Component lnd build complete with 4 warnings clm built in 73.175581 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250523-035202 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250523-035202 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250523-035202 docn built in 0.502756 seconds cice built in 127.382492 seconds Component atm build complete with 110 warnings cam built in 152.358122 seconds Building cesm from /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250523-035202 Total build time: 324.799897 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-23 03:57:27 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:57:28 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:57:28 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cice//cime_config/buildnml 2025-05-23 03:57:28 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:57:28 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:57:28 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:57:28 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:57:28 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:57:28 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX 2025-05-23 03:57:30 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:57:30 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:57:31 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cice//cime_config/buildnml 2025-05-23 03:57:31 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:57:31 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:57:31 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:57:31 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:57:31 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:57:31 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.250523-035729 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-827-g294f7921 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-23 03:57:54 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:57:54 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:57:54 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cice//cime_config/buildnml 2025-05-23 03:57:55 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:57:55 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:57:55 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:57:55 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:57:55 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:57:55 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250523-035753 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250523-035753 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250523-035753 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/share/buildlib.csm_share Component csm_share build complete with 28 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250523-035753 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250523-035753 Component lnd build complete with 4 warnings clm built in 74.932585 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250523-035753 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250523-035753 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250523-035753 docn built in 0.483323 seconds cice built in 128.913185 seconds Component atm build complete with 110 warnings cam built in 152.988968 seconds Building cesm from /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250523-035753 Total build time: 318.923979 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-23 04:03:13 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 04:03:13 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 04:03:14 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cice//cime_config/buildnml 2025-05-23 04:03:14 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 04:03:14 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 04:03:14 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 04:03:14 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 04:03:14 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 04:03:14 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX 2025-05-23 04:03:16 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 04:03:16 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 04:03:17 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cice//cime_config/buildnml 2025-05-23 04:03:17 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 04:03:17 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 04:03:17 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 04:03:17 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 04:03:17 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 04:03:17 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.250523-040315 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/run/cesm.log.*.gz: No such file or directory [Pipeline] } [Pipeline] // dir [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wp2_wp3) [Pipeline] script [Pipeline] { [Pipeline] sh Error message 'Error calling advance_wp2_wp3' found in log CAM CLUBB error handling test for advance_wp2_wp3 was SUCCESSFUL [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wm_wpxp) [Pipeline] script [Pipeline] { [Pipeline] sh Error message 'Error calling advance_xm_wpxp' found in log CAM CLUBB error handling test for advance_xm_wpxp was SUCCESSFUL [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS