Started by an SCM change Obtained jenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 2c670ccd5b09186877606c9c0ef3d20864e90167 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 2c670ccd5b09186877606c9c0ef3d20864e90167 # timeout=10 Commit message: "Autoupdated SILHS Commit 370b85fd1991810e0a1dec311f66ad10fa92275f Author: bmg929 Date: Wed Jul 17 23:42:18 2024 -0500 In my previous commit, I changed the domain of the maxloc commands in the computation of k_lh_start to check over the arrays from levels 2:nz. However, when that happens, the output will be offset by 1. Consider a situation where the rcm max is at level 2. By being passed 2 through nz only, maxloc will return a value of 1. I needed to add +1 to the output to rectify this issue. The results are BIT_CHANGING." > git rev-list --no-walk d090d209e7dce1c37eef4c2a1714370fee64bdc8 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju ++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju ++ source /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37 + python3 /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/bit_diff_cam_r8029_config ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 PASS: All 3D output vars are zero. Traceback (most recent call last): File "/home/jenkins/cam_r8029_flags_bit_diff_test_workspace/repo/run_scripts/set_up_cam_coarse_res.py", line 78, in os.mkdir("ccs_config/machines/larson-group") FileExistsError: [Errno 17] File exists: 'ccs_config/machines/larson-group' ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 PASS: All 3D output vars are zero. PASS: All 3D output vars are zero. Traceback (most recent call last): File "/home/jenkins/cam_r8029_flags_bit_diff_test_workspace/repo/run_scripts/set_up_cam_coarse_res.py", line 78, in os.mkdir("ccs_config/machines/larson-group") FileExistsError: [Errno 17] File exists: 'ccs_config/machines/larson-group' ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 PASS: All 3D output vars are zero. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/repo Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu/run/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37', '\nrepo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'] Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 1480f928c61b1c05c7f0ceea14a408b63b3eacaa Found: BIT_CHANGING Parsing message from commit: 2c670ccd5b09186877606c9c0ef3d20864e90167 Found: BIT_CHANGING Checking Commit: 1480f928c61b1c05c7f0ceea14a408b63b3eacaa Checking out d090d209e7dce1c37eef4c2a1714370fee64bdc8 Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37' Running: ' repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh' Output from d090d209e7dce1c37eef4c2a1714370fee64bdc8 already saved Diffing: 'python3 repo/run_scripts/netcdf_3D_vars_diff.py d090d209e7dce1c37eef4c2a1714370fee64bdc8 d090d209e7dce1c37eef4c2a1714370fee64bdc8' Checking out 1480f928c61b1c05c7f0ceea14a408b63b3eacaa Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37' Running: ' repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh' Output from d090d209e7dce1c37eef4c2a1714370fee64bdc8 already saved Diffing: 'python3 repo/run_scripts/netcdf_3D_vars_diff.py 1480f928c61b1c05c7f0ceea14a408b63b3eacaa d090d209e7dce1c37eef4c2a1714370fee64bdc8' WARNING: commit '1480f928c61b1c05c7f0ceea14a408b63b3eacaa' was supposed to be BIT_CHANGING, but is not. Checking Commit: 2c670ccd5b09186877606c9c0ef3d20864e90167 Output from 1480f928c61b1c05c7f0ceea14a408b63b3eacaa already saved Output from d090d209e7dce1c37eef4c2a1714370fee64bdc8 already saved Diffing: 'python3 repo/run_scripts/netcdf_3D_vars_diff.py 1480f928c61b1c05c7f0ceea14a408b63b3eacaa d090d209e7dce1c37eef4c2a1714370fee64bdc8' Checking out 2c670ccd5b09186877606c9c0ef3d20864e90167 Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37' Running: ' repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh' Output from 1480f928c61b1c05c7f0ceea14a408b63b3eacaa already saved Diffing: 'python3 repo/run_scripts/netcdf_3D_vars_diff.py 2c670ccd5b09186877606c9c0ef3d20864e90167 1480f928c61b1c05c7f0ceea14a408b63b3eacaa' WARNING: commit '2c670ccd5b09186877606c9c0ef3d20864e90167' was supposed to be BIT_CHANGING, but is not. =============================== Test Results =============================== Commit Range Checked = d090d209e7dce1c37eef4c2a1714370fee64bdc8...2c670ccd5b09186877606c9c0ef3d20864e90167 No new Unresolved commits found. Fake BIT_CHANGING Commits: 1480f928c61b1c05c7f0ceea14a408b63b3eacaa 2c670ccd5b09186877606c9c0ef3d20864e90167 No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: 2c670ccd5b09186877606c9c0ef3d20864e90167 =============================== Cleanup =============================== Removed repo. Removing all generated output REMOVING: d090d209e7dce1c37eef4c2a1714370fee64bdc8 REMOVING: 1480f928c61b1c05c7f0ceea14a408b63b3eacaa REMOVING: 2c670ccd5b09186877606c9c0ef3d20864e90167 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS