Started by an SCM change Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git ha:////4Cjittq30hkYZjMOAEpajcZR0V8yygtTgYIvukrI0KfJAAAAoh+LCAAAAAAAAP9tjTEOwjAQBM8BClpKHuFItIiK1krDC0x8GCfWnbEdkooX8TX+gCESFVvtrLSa5wtWKcKBo5UdUu8otU4GP9jS5Mixv3geZcdn2TIl9igbHBs2eJyx4YwwR1SwULBGaj0nRzbDRnX6rmuvydanHMu2V1A5c4MHCFXMWcf8hSnC9jqYxPTz/BXAFEIGsfuclm8zQVqFvQAAAA==[Pipeline] Start of Pipeline ha:////4OfoazyckbArggUo3ISfTGPxmxxRdP+stEFkv8dA98gsAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycohUghExsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jduZBmjwAAAAA==[Pipeline] node Still waiting to schedule task Waiting for next available executor Running on ha:////4G0rVGZLwo0Ou9gETTdp4+2MbPAapBxm7bvz8E5cWqs8AAAAnB+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAzWEgYB/eT83ILSktQi/dzMkuQMfQBx0n6exQAAAA==mitch in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test ha:////4FDlcnFr9e5989JzoK959XjJGyMMLx4dByuovsdbc3KZAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0gA0xsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jfoP95RwAAAAA==[Pipeline] { ha:////4AE7Ft0kRt6yDHyl9I4e/bM1ttJPxUELiw6uNZ0QbR7MAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0gQkxsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jc09154wAAAAA==[Pipeline] stage ha:////4FkD70+B6a5J0827ONeUqfTiQDpR4+VE+gWaygTpm9OWAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0ggUxsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jek7ggRwAAAAA==[Pipeline] { (Declarative: Checkout SCM) ha:////4DWhhCSzqWCnqMgye1segLjeKHvm/Xy9xZ/t+WlCd57ZAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbaWGsbAmNJ0AWEZb8zwLrbuWJvJp3kLiJlZNMMm+a93rDOic4UbLcG+wdZu14DKOti0+U+lugiXu6ck2YKRguzSSpM+cFJRUDS1gDKwEbgzpQdmgLbIVXD9UGhba9lFS/o4DGdQM8gYlqLiqVL8wJdvexy4Q/z18BzLEA29ce4gfg7KmOvAAAAA==[Pipeline] checkout The recommended git tool is: git DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead. Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 89f9bf13959f92463d0a171d7e710658edf4f5b3 (refs/remotes/origin/clubb_silhs_devel) > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 89f9bf13959f92463d0a171d7e710658edf4f5b3 # timeout=10 Commit message: "Autoupdated CLUBB_core Commit 8369512fcc6487603491e12ac13376de2aec2a0b Author: Daniel Ebel Date: Mon Oct 19 21:23:25 2026 -0500 Clubb params 1d to 2d fix (#1392) * Fix: clubb params is a shape (ngrdcol,nparams) that is passed into subroutines that expect a 1d array" > git rev-list --no-walk 1eca30798f2886be7d8594c8826320737b7a76cd # timeout=10 ha:////4M0lBXi8L0O4N1wFY5lRb5LBLalDgJBC9nNrfR5OtcBNAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbGRNjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI6xADvU7j9Dg2gqvAAAAA==[Pipeline] } ha:////4C9gVc/RMYuh4P3VFxhWoDv34M8ROVTApORMFM74AFZeAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQRbWRhjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI6xADvU7j9J+wGOvAAAAA==[Pipeline] // stage ha:////4OMUaFGtWHpXHrnJEqNuTaTTH7zYW1TXuR1OOwesYqpuAAAAph+LCAAAAAAAAP9tjTEOwjAQBM9BKWgpeYQDEh2iorXc8AITG+PEugv2haTiRXyNPxCIRMVWOyut5vmCMic4UPKycdgGzHWQXez91ORAqb1EGmRDZ1kTZopOajdosu44oyZ2MEcUsFCwdFhHygE9w0o15m6qaNBXJ07TtldQBHuDBwg1mdkk/sKYYH3tbSb8ef4KYOwYxI6h2G4+x/INtuQqUcEAAAA=[Pipeline] withEnv ha:////4POBlF/w66TdRjLOMaZmbKoF4qlP3EsxWZ8MwJufSwVuAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+DOrAycoiUzoiJNerCCUITQtLo/zZJSSdOxNW4Ay2VmPBg2Zas93pDGQOcKBjuNHYWY2t570czJ54pdDdPmTu68pYwkte80bkhpc9rbShpWFUw2AjYamw9RYsmwU44+ZCVl2iqSwrzdhTArBrgCYWYyUmG9C1TgP19VJHwx/kLgKlPwOrDYvXyLD8BobDcwgAAAA==[Pipeline] { ha:////4CZMEuZltkWrpbK+PirOYQRSCqpH7y+OE712fANE7n/gAAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUZUVMrFEWThCaEJJG/7dJSjpxIq7GHWipxIQHy7ZkvdcbqhjgRMEwp7GzGFvLej+aObFMobt5yszRlbWEkbxmQmdBSp/XKihpWFWUsOGw1dh6ihZNgh138iFrL9HUlxTm7cihtGqAJxR8JicZ0rdMAfb3UUXCH+cvAKY+Qdk0ix2WZ/UBbwyqm8IAAAA=[Pipeline] stage ha:////4KUMCWFfscl/TOIZTM5EUNA/xqZlP8Dml1BjSoC8QS+sAAAAph+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUwIiYukZZOEFoQkgb/V9+UtqJE3E17kBLJSY8WLYl673eUESGE7ETjcXWY6y96ELvpiQG4vYaaBANXURNGClYoeygyNhqqYqShUVZDisJa4t1oOjRJdjIRj90GTS68px42o4Scm/u8IRMTuSkOX3LyLC99SYS/jh/ATB2CfLdfrbD/Cw+y7kUycIAAAA=[Pipeline] { (Update sys_admin Repo) ha:////4ANXFJd3P2uH6oG6fHcMxklx/Urd1yvPwqSjWMs4SBztAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiBB2iSmu54QUmNsaJdWdsh6TiRXyNPxCIRMUWq51t5vmCZYpw5GixNdQ5So3D4Hs7LRw4dhfPA7Z8xoYpsTcozSBZm3pGydnAnKKEhYCVocZzcmQzrEWr7qryimx1ynH6DgJKp2/wgEJM5qxi/sIYYXPtdWL6ef4KYAwZyu3uU/vwBgq0rvS+AAAA[Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. ha:////4HhaSfPPAiGCqYCWgOSOnTKEXCDVzERShhXph91HbicNAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIihKgQVVrLDS8wsTFOrDtjOyQVL+Jr/IFAJCq2WO1sM88XLFOEI0eLraHOUWocBt/baeHAsbt4HrDlMzZMib1BaQbJ2tQzSs4G5hQlLASsDDWekyObYS1adVeVV2SrU47TdxBQOn2DBxRiMmcV8xfGCJtrrxPTz/NXAGMIGcrt/lO7N7BnLt++AAAA[Pipeline] } ha:////4FVL20V4kFZmoupJ3yD+ARu1qGTPdJik5rudocilzqMlAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiKGgQVVrLDS8wsTFOrDtjOyQVL+Jr/IFAJCq2WO1sM88XLFOEI0eLraHOUWocBt/baeHAsbt4HrDlMzZMib1BaQbJ2tQzSs4G5hQlLASsDDWekyObYS1adVeVV2SrU47TdxBQOn2DBxRiMmcV8xfGCJtrrxPTz/NXAGMIGcrt/lO7N4glvS6+AAAA[Pipeline] // stage ha:////4GMEqHjUfYXAoMs0hqFp6DevraMZMFu0DPhP4N7yQmvYAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUnRgQE2uUhROEJoSk0f9tkpJOnIircQdaKjHhwbItWe/1hioGOFEwzGnsLMbWst6PZk4sU+hunjJzdGUtYSSvmdBZkNLntQpKGlYVJWw4bDW2nqJFk2DHnXzI2ks09SWFeTtyKK0a4AkFn8lJhvQtU4D9fVSR8Mf5C4CpT1A2zWKH5Vl9ANydZ8vCAAAA[Pipeline] stage ha:////4JQl56uZsMv+8JjlsYRZ9i8KX7vcTdAxCqZjHZrE7A7YAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUTCAhpq5RFk4QmhDSRv+Xn5R24kRcjTvQUokJD5ZtyXqvNxSR4UTsRGOx9RhrL7rQuymJgbi9BhpEQxdRE0YKVig7KDK2WqqiZGFRlsNKwtpiHSh6dAk2stEPXQaNrjwnnrajhNybOzwhkxM5aU7fMjJsb72JhD/OXwCMXYJ8t5/tMD+LD0rlhNLCAAAA[Pipeline] { (MTso BFB Check) ha:////4Jmo/GmwAyI5OMGVC8eKXncFYpj82lnTpSeVFCNaGtqpAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUbCDE1DXKwglCE0La6P/yk9JOnIircQdaKjHhwbItWe/1hiIynIidaCy2HmPtRRd6NyUxELfXQINo6CJqwkjBCmUHRcZWS1WULCzKclhJWFusA0WPLsFGNvqhy6DRlefE03aUkHtzhydkciInzelbRobtrTeR8Mf5C4CxS5Dv9rMd5mfxASnCIIrCAAAA[Pipeline] catchError ha:////4N5lf9rc8Y048ScINX4iebKhxPF4iLHWsZ6VDtoUSganAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycogU2BDqxBp14QShCSFp9H9JUtKJE3E17kCgEhMeLNuS9Z4vqIKHhrxmVmFvMHSGDW7UObFEvr84SszSmXWEgZxirUotSXWca0tRwayihAWHpcLOUTCoI6y4FXdRO4G6PkWftwOH0sgbPKDgmRyFj98yeVhfRxkIf5y/AJiGCOV2n223+TyrN7xWSV3CAAAA[Pipeline] { ha:////4NcrD/dn8dORW+KPEvPBmy+RzefqCl3ogLMnW8chnWZdAAAAox+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOICtIgqreWGF5jYGCfWnbEdkooX8TX+QCASFVusdraZ5wuWKcKRo8XWUOcoNQ6D7+20cODYXTwP2PIZG6bE3qA0g2Rt6hklZwNzihIWAlaGGs/Jkc2wFq26q8orstUpx+k7CCidvsEDCjGZs4r5C2OEzbXXienn+SuAMWQo99tP7cIbaOP4NL4AAAA=[Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. fms up to date. Recursively checking out submodules of fms ccs_config up to date. cdeps up to date. Recursively checking out submodules of cdeps share up to date. cmeps up to date. tuv-x up to date. tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD parallelio up to date. cice up to date. Recursively checking out submodules of cice Recursively checking out submodules of HEMCO mizuRoute up to date. Recursively checking out submodules of mizuRoute geoschem up to date. Recursively checking out submodules of geoschem Recursively checking out submodules of src clm up to date. Recursively checking out submodules of clm cime up to date. Recursively checking out submodules of cime Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM mid top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3208-g89f9bf139 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-20 03:34:57 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:34:58 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:34:58 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:34:58 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:34:59 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:34:59 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:34:59 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:34:59 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:34:59 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261020-033457 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261020-033457 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261020-033457 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Component csm_share build complete with 214 warnings Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261020-033457 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261020-033457 Component lnd build complete with 2472 warnings clm built in 61.243420 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261020-033457 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261020-033457 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261020-033457 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261020-033457 docn built in 1.361835 seconds Component rof build complete with 145 warnings mosart built in 9.036968 seconds Component ice build complete with 502 warnings cice built in 89.594909 seconds Component atm build complete with 6141 warnings cam built in 129.400633 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261020-033457 Component cesm exe build complete with 54 warnings Total build time: 285.267215 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-20 03:39:47 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:39:47 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:39:48 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:39:48 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:39:48 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:39:48 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:39:48 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:39:48 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:39:48 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-20 03:39:50 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:39:50 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:39:51 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:39:51 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:39:51 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:39:51 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:39:51 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:39:51 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:39:51 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.261020-033949 Submitted job case.run with id None Success! Checking out externals... chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout cam-sima up to date. fv3 up to date. Recursively checking out submodules of fv3 geoschem up to date. Recursively checking out submodules of geoschem cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout ext_co2_cooling up to date. rtm up to date. mosart up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute ccs_config has modified files: ['machines/Depends.nvhpc', 'machines/config_machines.xml'] cime up to date. Recursively checking out submodules of cime cmeps has modified files: ['cime_config/config_component.xml'] cdeps up to date. Recursively checking out submodules of cdeps share up to date. parallelio up to date. cice up to date. Recursively checking out submodules of cice clm up to date. Recursively checking out submodules of clm fms up to date. Recursively checking out submodules of fms tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD tuv-x up to date. Recursively checking out submodules of HEMCO Recursively checking out submodules of src Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM mid top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3202-g6fda8e144 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-20 03:40:18 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:40:19 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:40:19 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:40:19 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:40:19 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:40:19 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:40:19 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:40:19 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:40:19 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261020-034018 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Building pio with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261020-034018 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261020-034018 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261020-034018 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261020-034018 clm built in 1.154128 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261020-034018 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261020-034018 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261020-034018 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261020-034018 mosart built in 0.698451 seconds cice built in 0.716746 seconds docn built in 1.125452 seconds Component atm build complete with 155 warnings cam built in 14.603870 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261020-034018 Component cesm exe build complete with 11 warnings Total build time: 30.868108 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-20 03:40:53 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:40:54 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:40:54 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:40:54 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:40:54 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:40:55 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:40:55 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:40:55 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:40:55 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-20 03:40:56 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:40:57 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:40:57 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:40:57 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:40:57 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:40:57 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:40:57 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:40:57 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:40:57 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.261020-034056 Submitted job case.run with id None Success! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc Run commands: ['rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . &&\nsed -i -e \'s/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/\' -e \'s/^COMPSET=.*/COMPSET="FHISTC_MTso"/\' -e \'s/ -silhs / /g\' -e \'s/ -psubcols \\$NUMSC//g\' -e \'s/ -DSILHS//g\' -e "s/^subcol_scheme = .*/subcol_scheme = \'off\'/" -e \'s/^use_subcol_microp = .*/use_subcol_microp = .false./\' -e \'s/^microp_uniform = .*/microp_uniform = .false./\' -e "s/, \'SILHS_CLUBB_PRECIP_FRAC\',//" -e "/^\'SILHS_CLUBB_ICE_SS_FRAC\'/d" run_scripts/run_cesm_uwm_coarse_res.sh &&\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 89f9bf13959f92463d0a171d7e710658edf4f5b3 Found: BIT_CHANGING Found: BIT_CHANGING Checking Commit: 89f9bf13959f92463d0a171d7e710658edf4f5b3 Checking out 89f9bf13959f92463d0a171d7e710658edf4f5b3 Running: 'rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . && sed -i -e 's/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_MTso"/' -e 's/ -silhs / /g' -e 's/ -psubcols \$NUMSC//g' -e 's/ -DSILHS//g' -e "s/^subcol_scheme = .*/subcol_scheme = 'off'/" -e 's/^use_subcol_microp = .*/use_subcol_microp = .false./' -e 's/^microp_uniform = .*/microp_uniform = .false./' -e "s/, 'SILHS_CLUBB_PRECIP_FRAC',//" -e "/^'SILHS_CLUBB_ICE_SS_FRAC'/d" run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 89f9bf13959f92463d0a171d7e710658edf4f5b3 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Running: 'rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . && sed -i -e 's/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_MTso"/' -e 's/ -silhs / /g' -e 's/ -psubcols \$NUMSC//g' -e 's/ -DSILHS//g' -e "s/^subcol_scheme = .*/subcol_scheme = 'off'/" -e 's/^use_subcol_microp = .*/use_subcol_microp = .false./' -e 's/^microp_uniform = .*/microp_uniform = .false./' -e "s/, 'SILHS_CLUBB_PRECIP_FRAC',//" -e "/^'SILHS_CLUBB_ICE_SS_FRAC'/d" run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Commit '89f9bf13959f92463d0a171d7e710658edf4f5b3' is BIT_CHANGING and properly labelled as such. =============================== Test Results =============================== Commit Range Checked = 6fda8e14438857fdf16e8afb5b32a52302cfd2e9...89f9bf13959f92463d0a171d7e710658edf4f5b3 -- CheckRange was set to False, no intermediate commits checked New Unresolved Commits: 89f9bf13959f92463d0a171d7e710658edf4f5b3 No fake BIT_CHANGING commits found. Resolved: 89f9bf13959f92463d0a171d7e710658edf4f5b3 No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Ignoring 89f9bf13959f92463d0a171d7e710658edf4f5b3 since it failed to produce output. =============================== Cleanup =============================== Removing all generated output ================== Unresolved Commit Status ================== No remaining Unresolved Commits. ================== FAILED Commits ================== These are the commits which entirely failed to produce output: 89f9bf13959f92463d0a171d7e710658edf4f5b3 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Exiting with code: 0 ha:////4DxoqOoMF3W4e8gvo/uRHkqg7s+WIZbUKvy395yCwBZpAAAAox+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOKC0iIqWisNLzCJMXasO8d2cCpexNf4A4FIVGyx2tlmni9YxwBHDhqtot5QbA16N+p5YebQXx1ntHzBlimyU9io3HCnTgs2nBQsKUpYCdgoah1HQzrBVlh5l5WTpKtzCvN3EFCaboAHFGI2JxnSF6YAu9vYRaaf568AJu8TlHX9qf0b7E/nQb4AAAA=[Pipeline] } ha:////4ODCRGoy1xqzBX9G/lq/ob4uL8V3Q4boNnm9tpwFrqsZAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIioEIoFa3lhheYxBgn1l2wHZyKF/E1/oBFJCq2WO1sM683LIOHmr3BTlNvKTQWBzeavDCx76+OE3Z8wYYpsNModZLc6tOMkqOGOUUJCwErTY3jYMlEWItOPVTlFJnqHH3+jgJK297hCYXI5qh8/MLkYXMb28D08/wVwDQMEcrdPtf28AEud0rYvgAAAA==[Pipeline] // catchError ha:////4CnX1KD+Jc2H5uXfq/hvf2lB8uteVSE1PQj6OVReMfzhAAAAph+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiEAUSSkVrueEFJjHGiXUXbAen4kV8jT9gEYmKLVY728zrDcvgoWZvsNPUWwqNxcGNJi9M7Pur44QdX7BhCuw0Sp0kt/o0o+SoYU5RwkLASlPjOFgyEdaiUw9VOUWmOkefv6OA0rZ3eEIhsjkqH78wedjcxjYw/Tx/BTANQ4Ryt8+1PXwAAHdIsr4AAAA=[Pipeline] } ha:////4Jw026sebAzk1v6kREYyUEJ4YvYJcWVmuxiR3H72T9zgAAAAph+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIikBAFSkVrueEFJjHGiXUXbAen4kV8jT9gEYmKLVY728zrDcvgoWZvsNPUWwqNxcGNJi9M7Pur44QdX7BhCuw0Sp0kt/o0o+SoYU5RwkLASlPjOFgyEdaiUw9VOUWmOkefv6OA0rZ3eEIhsjkqH78wedjcxjYw/Tx/BTANQ4Ryt8+1PXwANLmr6b4AAAA=[Pipeline] // stage ha:////4Ag8eYKuhvcL8acpg7tuIlJSYImh1PlPBYU9k2octKn+AAAAqB+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUZWBBTF2jLpwgNCEkjf4vSUo6cSKuxh0IVGLCg2Vbst7zBVXwcCSvmVU4GAy9YaObdE4skR8ujhKzdGY9YSCnWKdSR1K1S+0oKlhUlLDisFbYOwoGdYQNt+IuaidQ16fo83bgUBp5gwcUPJOj8PFbZg/b6yQD4Y/zFwDzGKFsmmy7/edZvQHkVNMxwgAAAA==[Pipeline] stage ha:////4GPiASIdtLsyvLsWPttNY09W7EF2rwgOK8JDKATfpDG2AAAAqB+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUYoABMXWNsnCC0ISQNvq//KS0EyfiatyBlkpMeLBsS9Z7vaGIDCdiJxqLrcdYe9GF3k1JDMTtNdAgGrqImjBSsELZQZGx1VIVJQuLshxWEtYW60DRo0uwkY1+6DJodOU58bQdJeTe3OEJmZzISXP6lpFhe+tNJPxx/gJg7BLku/1sh/lZfAAyQCqkwgAAAA==[Pipeline] { (LTso + SILHS BFB Check) ha:////4JJ1oLT8dU5Q8Yv2Vv9ZLaJg95yj2aqqgBlsmaYZOMNmAAAAqB+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUYgEJMXWNsnCC0ISQNvq//KS0EyfiatyBlkpMeLBsS9Z7vaGIDCdiJxqLrcdYe9GF3k1JDMTtNdAgGrqImjBSsELZQZGx1VIVJQuLshxWEtYW60DRo0uwkY1+6DJodOU58bQdJeTe3OEJmZzISXP6lpFhe+tNJPxx/gJg7BLku/1sh/lZfAAnLfKUwgAAAA==[Pipeline] catchError ha:////4B9eUp+CDVT3XCILJBecAI+b1Q+q2dyQzE8ZxwERMrzJAAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUYgIhpq5RFk4QmhDSRv+Xn5R24kRcjTvQUokJD5ZtyXqvNxSR4UTsRGOx9RhrL7rQuymJgbi9BhpEQxdRE0YKVig7KDK2WqqiZGFRlsNKwtpiHSh6dAk2stEPXQaNrjwnnrajhNybOzwhkxM5aU7fMjJsb72JhD/OXwCMXYJ8t5/tMD+LD0QKVszCAAAA[Pipeline] { ha:////4MPFtWJ2EXDlPBeCyvmbapX7bqUSbRUhhrNYc3oOYgGeAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOKCoEIoFa3lhheYxBgn1l2wHZyKF/E1/oBFJCq2WO1sM683LIOHmr3BTlNvKTQWBzeavDCx76+OE3Z8wYYpsNModZLc6tOMkqOGOUUJCwErTY3jYMlEWItOPVTlFJnqHH3+jgJK297hCYXI5qh8/MLkYXMb28D08/wVwDREKHeHXPvt8AHN/bm5vgAAAA==[Pipeline] deleteDir ha:////4GuEislmJso3LjnG28Y0Kfc+sHSLqo23Fj9PLCjBXjF3AAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIioEIoFa3lhheYxBgn1l2wHZyKF/E1/oBFJCq2WO1sM683LIOHmr3BTlNvKTQWBzeavDCx76+OE3Z8wYYpsNModZLc6tOMkqOGOUUJCwErTY3jYMlEWItOPVTlFJnqHH3+jgJK297hCYXI5qh8/MLkYXMb28D08/wVwDREKHeHXPvt8AGMzKKgvgAAAA==[Pipeline] checkout The recommended git tool is: git DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead. Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 89f9bf13959f92463d0a171d7e710658edf4f5b3 (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated CLUBB_core Commit 8369512fcc6487603491e12ac13376de2aec2a0b Author: Daniel Ebel Date: Mon Oct 19 21:23:25 2026 -0500 Clubb params 1d to 2d fix (#1392) * Fix: clubb params is a shape (ngrdcol,nparams) that is passed into subroutines that expect a 1d array" ha:////4P5OsxqUG5FsuFTbUpd6Kkn8hBbld4t7janw2xhnc696AAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIihQohqrRWGl5gYmOcWHfGdkgqXsTX+AMWkajYYrWzzbzesI4BThwM9poGS7Gz6N1o8sKJw3B1PGHPF+yYIjuNrZ5aVrpZsOWkYUlRwkrARlPnOFoyCbailw9ZOUmmOqeQv6OA0qo7PKEQ2ZxkSF+YA+xuo4pMP89fAcw+QVkfcu1r/wFPn4+LvgAAAA==[Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_LTso_SILHS_test_config > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 89f9bf13959f92463d0a171d7e710658edf4f5b3 # timeout=10 Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. fms up to date. Recursively checking out submodules of fms ccs_config up to date. cdeps up to date. Recursively checking out submodules of cdeps share up to date. tuv-x up to date. cmeps up to date. tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD mizuRoute up to date. Recursively checking out submodules of mizuRoute Recursively checking out submodules of HEMCO geoschem up to date. Recursively checking out submodules of geoschem cice up to date. Recursively checking out submodules of cice parallelio up to date. clm up to date. Recursively checking out submodules of clm Recursively checking out submodules of src cime up to date. Recursively checking out submodules of cime Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM low top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3208-g89f9bf139 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-20 03:42:10 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:42:10 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:42:10 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:42:11 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:42:11 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:42:11 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:42:11 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:42:11 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:42:11 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261020-034209 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261020-034209 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261020-034209 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Component csm_share build complete with 214 warnings Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261020-034209 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261020-034209 Component lnd build complete with 2472 warnings clm built in 61.468735 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261020-034209 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261020-034209 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261020-034209 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261020-034209 docn built in 1.433928 seconds Component rof build complete with 145 warnings mosart built in 10.249362 seconds Component ice build complete with 502 warnings cice built in 99.957419 seconds Component atm build complete with 6142 warnings cam built in 138.761152 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261020-034209 Component cesm exe build complete with 54 warnings Total build time: 294.902837 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-20 03:47:08 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:47:09 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:47:09 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:47:09 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:47:09 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:47:09 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:47:09 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:47:09 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:47:09 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-20 03:47:11 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:47:11 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:47:12 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:47:12 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:47:12 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:47:12 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:47:12 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:47:12 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:47:12 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.261020-034710 Submitted job case.run with id None Success! Checking out externals... chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout cam-sima up to date. fv3 up to date. Recursively checking out submodules of fv3 geoschem up to date. Recursively checking out submodules of geoschem cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout ext_co2_cooling up to date. rtm up to date. mosart up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute ccs_config has modified files: ['machines/Depends.nvhpc', 'machines/config_machines.xml'] cime up to date. Recursively checking out submodules of cime cmeps has modified files: ['cime_config/config_component.xml'] cdeps up to date. Recursively checking out submodules of cdeps share up to date. parallelio up to date. cice up to date. Recursively checking out submodules of cice clm up to date. Recursively checking out submodules of clm fms up to date. Recursively checking out submodules of fms tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD tuv-x up to date. Recursively checking out submodules of HEMCO Recursively checking out submodules of src Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM low top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3202-g6fda8e144 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-20 03:47:39 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:47:39 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:47:39 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:47:40 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:47:40 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:47:40 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:47:40 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:47:40 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:47:40 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261020-034738 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Building pio with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261020-034738 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261020-034738 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261020-034738 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261020-034738 clm built in 1.132813 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261020-034738 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261020-034738 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261020-034738 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261020-034738 mosart built in 0.686516 seconds cice built in 0.696320 seconds docn built in 1.167885 seconds Component atm build complete with 158 warnings cam built in 15.268628 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261020-034738 Component cesm exe build complete with 11 warnings Total build time: 31.160750 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-20 03:48:14 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:48:14 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:48:15 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:48:15 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:48:15 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:48:15 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:48:15 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:48:15 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:48:15 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-20 03:48:17 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-20 03:48:17 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-20 03:48:18 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-20 03:48:18 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-20 03:48:18 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-20 03:48:18 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-20 03:48:18 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-20 03:48:18 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-20 03:48:18 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.261020-034816 Submitted job case.run with id None Success! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc Run commands: ['rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . &&\nsed -i -e \'s/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/\' -e \'s/^COMPSET=.*/COMPSET="FHISTC_LTso"/\' run_scripts/run_cesm_uwm_coarse_res.sh &&\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 89f9bf13959f92463d0a171d7e710658edf4f5b3 Found: BIT_CHANGING Found: BIT_CHANGING Checking Commit: 89f9bf13959f92463d0a171d7e710658edf4f5b3 Checking out 89f9bf13959f92463d0a171d7e710658edf4f5b3 Running: 'rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . && sed -i -e 's/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_LTso"/' run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 89f9bf13959f92463d0a171d7e710658edf4f5b3 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Running: 'rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . && sed -i -e 's/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_LTso"/' run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Commit '89f9bf13959f92463d0a171d7e710658edf4f5b3' is BIT_CHANGING and properly labelled as such. =============================== Test Results =============================== Commit Range Checked = 6fda8e14438857fdf16e8afb5b32a52302cfd2e9...89f9bf13959f92463d0a171d7e710658edf4f5b3 -- CheckRange was set to False, no intermediate commits checked New Unresolved Commits: 89f9bf13959f92463d0a171d7e710658edf4f5b3 No fake BIT_CHANGING commits found. Resolved: 89f9bf13959f92463d0a171d7e710658edf4f5b3 No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Ignoring 89f9bf13959f92463d0a171d7e710658edf4f5b3 since it failed to produce output. =============================== Cleanup =============================== Removing all generated output ================== Unresolved Commit Status ================== No remaining Unresolved Commits. ================== FAILED Commits ================== These are the commits which entirely failed to produce output: 89f9bf13959f92463d0a171d7e710658edf4f5b3 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Exiting with code: 0 ha:////4HIBViOglp6wBM93QYV8F6iuTS7i/tfjRHhTllJg/g/GAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPMKRSIUQVVorDS8w8WGcWHfGdkgqXsTX+AMWkajYYrWzzbzesI4BThyM6JEGS7GzwrvR5CUmDsPV8SR6voiOKbJD0eLUssZmwZYTwpKihJWEDVLnOFoyCbayVw9VOUWmOqeQv6OE0uo7PKGQ2ZxUSF+YA+xuo45MP89fAczeJyjrOtf+8AFZLxBVvgAAAA==[Pipeline] } ha:////4Lc1V3RFnG5phq1VbbK+r9C1/v+lvTSM7TJs7XLGOn1FAAAAph+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIiAQUSSkVrueEFJjHGiXUXbAen4kV8jT9gEYmKLVY728zrDcvgoWZvsNPUWwqNxcGNJi9M7Pur44QdX7BhCuw0Sp0kt/o0o+SoYU5RwkLASlPjOFgyEdaiUw9VOUWmOkefv6OA0rZ3eEIhsjkqH78wedjcxjYw/Tx/BTANQ4Ryt8+1PXwAdy8SP74AAAA=[Pipeline] // catchError ha:////4IEou+uMVbLxMw4mzmQRbdUvCN1nyi2s5lLPDwP5fvSgAAAAph+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIigRAFSkVrueEFJjHGiXUXbAen4kV8jT9gEYmKLVY728zrDcvgoWZvsNPUWwqNxcGNJi9M7Pur44QdX7BhCuw0Sp0kt/o0o+SoYU5RwkLASlPjOFgyEdaiUw9VOUWmOkefv6OA0rZ3eEIhsjkqH78wedjcxjYw/Tx/BTANQ4Ryt8+1PXwAQ+HxZL4AAAA=[Pipeline] } ha:////4LFjhYWMf+yaccOFyA9B3fEj81MKfh8WNNMxOQSNayWlAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOIigZQGUaW10vACExvjxLoztkNS8SK+xh+wiETFFqudbeb1hnUMcOJgsNc0WIqdRe9GkxdOHIar4wl7vmDHFNlpbPXUstLNgi0nDUuKElYCNpo6x9GSSbAVvXzIykky1TmF/B0FlFbd4QmFyOYkQ/rCHGB3G1Vk+nn+CmD2PkF5qHPt6w97o2KVvgAAAA==[Pipeline] // stage ha:////4DkLqVwc5U5tOcSXosicgj7zJwWRZPFxcTeYUrEe6hcLAAAAqB+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycohUFQMDYuoadeEEoQkhafR/SVLSiRNxNe5AoBITHizbkvWeL6iChyN5zazCwWDoDRvdpHNiifxwcZSYpTPrCQM5xTqVOpKqXWpHUcGiooQVh7XC3lEwqCNsuBV3UTuBuj5Fn7cDh9LIGzyg4JkchY/fMnvYXicZCH+cvwCYxwhl02Tb7T/P6g31jPhcwgAAAA==[Pipeline] stage ha:////4F8XZz8PYxKKdObMuZjnEK/gYmaj6L5xmG7ckC2tuMvHAAAAqB+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycoh0YAAJMXWNsnCC0ISQNvq//KS0EyfiatyBlkpMeLBsS9Z7vaGIDCdiJxqLrcdYe9GF3k1JDMTtNdAgGrqImjBSsELZQZGx1VIVJQuLshxWEtYW60DRo0uwkY1+6DJodOU58bQdJeTe3OEJmZzISXP6lpFhe+tNJPxx/gJg7BLku/1sh/lZfAD8aiCpwgAAAA==[Pipeline] { (Declarative: Post Actions) ha:////4GR24qncCGWGqT94MDZHzXtsjO053/5wF3W2eoxOIDX6AAAApx+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycoh0YAEhpq5RFk4QmhDSRv+Xn5R24kRcjTvQUokJD5ZtyXqvNxSR4UTsRGOx9RhrL7rQuymJgbi9BhpEQxdRE0YKVig7KDK2WqqiZGFRlsNKwtpiHSh6dAk2stEPXQaNrjwnnrajhNybOzwhkxM5aU7fMjJsb72JhD/OXwCMXYJ8t5/tMD+LD59NhPHCAAAA[Pipeline] script ha:////4GfcLj8GN8c59ge0SlA4zSZU7K9FsXe/I19Z6PkGDLLtAAAAqB+LCAAAAAAAAP9tjTEOwjAUQ3+LOrAycogUCRaEOrFGXThBaEJIGv1fkpR04kRcjTsQqMSEB8u2ZL3nC6rgoSGvmVXYGwydYYMbdU4ske8vjhKzdGYdYSCnWKtSS1Id59pSVDCrKGHBYamwcxQM6ggrbsVd1E6grk/R5+3AoTTyBg8oeCZH4eO3TB7W11EGwh/nLwCmIUK53WfbbT7P6g0Z/aLSwgAAAA==[Pipeline] { ha:////4EqZhVkOJo+wwcsQ4+BhkNOqiYXDNgNmwGVXf9EFSxRYAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOICEh2iSmu54QUmNsaJdWdsh6TiRXyNPxCIRMUWq51t5vmCZYpw5GixNdQ5So3D4Hs7LRw4dhfPA7Z8xoYpsTcozSBZm3pGydnAnKKEhYCVocZzcmQzrEWr7qryimx1ynH6DgJKp2/wgEJM5qxi/sIYYXPtdWL6ef4KYAwZyv32U7vwBl2WGva+AAAA[Pipeline] sh + chmod -R 755 /home/jenkins/cam_output ha:////4LNNwyU2THGGFSBeJ4fQZzoMC5FcTUVpD7EK1TyWghaaAAAApB+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOKCEB2iSmu54QUmNsaJdWdsh6TiRXyNPxCIRMUWq51t5vmCZYpw5GixNdQ5So3D4Hs7LRw4dhfPA7Z8xoYpsTcozSBZm3pGydnAnKKEhYCVocZzcmQzrEWr7qryimx1ynH6DgJKp2/wgEJM5qxi/sIYYXPtdWL6ef4KYAwhQ7nffWr7BlDdbXS+AAAA[Pipeline] } ha:////4FcrvqZFF1rmP0cx7puWE0uJgVFYNh2v43kFGh47rgOGAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOJShAYhqrRWGl5gYmOcWHfGdkgqXsTX+AMWkajYYrWzzbzesI4BThwM9poGS7Gz6N1o8sKJw3B1PGHPF+yYIjuNrZ5aVrpZsOWkYUlRwkrARlPnOFoyCbailw9ZOUmmOqeQv6OA0qo7PKEQ2ZxkSF+YA+xuo4pMP89fAczeJyj3da768AGWIKyJvgAAAA==[Pipeline] // script ha:////4K6IGTuZff2jrcKXoShcPD4ADB3iqT6wf2Ipg0KYI7VZAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPMIpSIGEqNJaaXiBiQ/jxLoztkNS8SK+xh+wiETFFqudbeb1hnUMcOJgRI80WIqdFd6NJi8xcRiujifR80V0TJEdihanljU2C7acEJYUJawkbJA6x9GSSbCVvXqoyiky1TmF/B0llFbf4QmFzOakQvrCHGB3G3Vk+nn+CmD2PkFZ17n2hw+4IK7jvgAAAA==[Pipeline] } ha:////4KbJjSbJ0XRLn6VTRfoDljMDWciSllM7yNzD4U/IR8PoAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOJSAKJAqWgtN7zAJMY4se6C7eBUvIiv8QcsIlGxxWpnm3m9YRk81OwNdpp6S6GxOLjR5IWJfX91nLDjCzZMgZ1GqZPkVp9mlBw1zClKWAhYaWocB0smwlp06qEqp8hU5+jzdxRQ2vYOTyhENkfl4xcmD5vb2Aamn+evAKZhiFDu9rm2hw+M7k24vgAAAA==[Pipeline] // stage ha:////4KJ+R5Vull99KF7QMVOw7eNWBuHBxWbZ7P5ThX+kqmYYAAAApR+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOKiSIgGUaW10vACExvjxLoztkNS8SK+xh+wiETFFqudbeb1hnUMcOJgsNc0WIqdRe9GkxdOHIar4wl7vmDHFNlpbPXUstLNgi0nDUuKElYCNpo6x9GSSbAVvXzIykky1TmF/B0FlFbd4QmFyOYkQ/rCHGB3G1Vk+nn+CmD2PkG5P+Sq6w+VW4zlvgAAAA==[Pipeline] } ha:////4DDpn6j5l9R8nYkX6FkRxgDMOrBu0Hef0FqsTF/5/JH7AAAAph+LCAAAAAAAAP9tjTEOwjAQBC9BFLSUPOICEhIFSkVrueEFJjHGiXUXbAen4kV8jT9gEYmKLVY728zrDcvgoWZvsNPUWwqNxcGNJi9M7Pur44QdX7BhCuw0Sp0kt/o0o+SoYU5RwkLASlPjOFgyEdaiUw9VOUWmOkefv6OA0rZ3eEIhsjkqH78wedjcxjYw/Tx/BTANQ4Ryf8i1234AprjXWb4AAAA=[Pipeline] // withEnv ha:////4LmFq3m7lB0hMnyz1Jr8urHeI99+0nisH1mAOAzC2Mv4AAAAox+LCAAAAAAAAP9tjbEOgjAURS8YB1dHP6IsDCbGybVh8Qsq1Fpo3sP2IUx+kb/mP0gkcfJO95zlvN5Yp4gjR6daS52nVHvVh8HNT40cu2vgUbV8UTVT4mBVZceKG3tasGKxWJblWGlsLNWBkycn2OrWPEwRDLniLHF2B43cN3c8kem5LCbKF6aI3W1oEtOv8zeAqe8FebkXZOUH9/H4sr0AAAA=[Pipeline] } ha:////4KLpGhouKsZajCZFdxkqe2Xx5xkJy/lUvV7g4xgoDK03AAAAox+LCAAAAAAAAP9tjTEOwjAQBDdBFLSUPMIpoEGIitZKwwtMYowT6y7YF5KKF/E1/kBEJCq22plmXm8sU8SRo1ONpdZTqrzqQu+mpwaO7TXwoBq+qIopcbCqtEPJtT3NWLJYzMtyLDRWlqrAyZMTrHVjHqYIhlxxlji5g0bu6zueyPRUFhPlC2PE5tbXienX+RvA2HWCfLcXZNsP5E38Eb0AAAA=[Pipeline] // node ha:////4DdwqfMSUYj3dJGc8cY+oN+FUUA6iG0w/JjWmnAdEPfnAAAAox+LCAAAAAAAAP9tjTEOwjAQBDdBFLSUPMJBSFSIitZKwwtMYowT6y7YF5KKF/E1/kBEJCq22plmXm8sU8SRo1ONpdZTqrzqQu+mpwaO7TXwoBq+qIopcbCqtEPJtT3NWLJYzMtyLDRWlqrAyZMTrHVjHqYIhlxxlji5g0bu6zueyPRUFhPlC2PE5tbXienX+RvA2HWCfL8VZLsPpsy3oL0AAAA=[Pipeline] End of Pipeline Finished: SUCCESS