Started by user unknown or anonymous Obtained jenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 # timeout=10 Commit message: "Renaming tests to make clear which uses debugging and which doesnt. Intel-oneapi currently doesn't work with debugging, see https://github.com/larson-group/sys_admin/issues/829\#issuecomment-2212729099" > git rev-list --no-walk 2be2b0d0d25b26a03f8053fa505c8ce962661dad # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/cam_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/cam_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export PATH MANPATH LD_LIBRARY_PATH ++ export SVNROOT=http://carson.math.uwm.edu/repos ++ SVNROOT=http://carson.math.uwm.edu/repos ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju ++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju ++ source /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc esmf + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/12.2.0-v5od57d (required by: gmp/6.3.0-wmkgoai, mpfr/4.2.1-z4h5vuo, mpc/1.3.1-7yebwoe, zlib-ng/2.1.6-sgcwuo6, zstd/1.5.6-4yyzf3h, gcc/13.1.0, libpciaccess/0.17-m6rj66n, xz/5.4.6-dc2pskh, libxml2/2.10.3-gipjgfv, ncurses/6.5-tl7ktgt, hwloc/2.9.3-btuxxs7, libfabric/1.21.0-n2upgxo, yaksa/0.3-snaqoka, bzip2/1.0.8-45glntl, lz4/1.9.4-p5fhvz2, snappy/1.1.10-557fi2m, c-blosc/1.21.5-ifrgevx, pkgconf/2.2.0-5yfc5u2, libaec/1.0.6-k3ttt5u) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37 + python3 /home/jenkins/cam_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_bit_diff_test_workspace/bit_diff_cam_config ERROR: No machine nelson found Error creating new case specified use --force to set ERROR: Undefined env var 'GFORTRAN_NETCDF_FORTRAN' Traceback (most recent call last): File "/home/jenkins/cam_bit_diff_test_workspace/repo/run_scripts/set_up_cam_coarse_res.py", line 78, in os.mkdir("ccs_config/machines/larson-group") FileExistsError: [Errno 17] File exists: 'ccs_config/machines/larson-group' ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Traceback (most recent call last): File "/home/jenkins/cam_bit_diff_test_workspace/repo/run_scripts/set_up_cam_coarse_res.py", line 78, in os.mkdir("ccs_config/machines/larson-group") FileExistsError: [Errno 17] File exists: 'ccs_config/machines/larson-group' ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 =============================== Configuring Test =============================== Working directory set to: /home/jenkins/cam_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/cam_bit_diff_test_workspace/repo Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrepo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --mach nelson --silhs 4 repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 7bfe29a485e7b753a079ade0b887e212f7f48989 Parsing message from commit: d90b25c0dd5e712488e84d9668f1e2049ecbd562 Parsing message from commit: b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 Checking Commit: 7bfe29a485e7b753a079ade0b887e212f7f48989 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: d90b25c0dd5e712488e84d9668f1e2049ecbd562 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 Running: final commit to check, not labelled BIT_CHANGING Checking out b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --mach nelson --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out 2be2b0d0d25b26a03f8053fa505c8ce962661dad Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --mach nelson --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 2be2b0d0d25b26a03f8053fa505c8ce962661dad There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== ISSUE WITH COMMIT DETECTED: b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 differs from 2be2b0d0d25b26a03f8053fa505c8ce962661dad Finding all BIT_CHANGING commits in range: 2be2b0d0d25b26a03f8053fa505c8ce962661dad...b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 Checking out 7bfe29a485e7b753a079ade0b887e212f7f48989 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --mach nelson --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 7bfe29a485e7b753a079ade0b887e212f7f48989 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Commit 2be2b0d0d25b26a03f8053fa505c8ce962661dad already failed. Will not run again Checking out d90b25c0dd5e712488e84d9668f1e2049ecbd562 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --mach nelson --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: d90b25c0dd5e712488e84d9668f1e2049ecbd562 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Commit 7bfe29a485e7b753a079ade0b887e212f7f48989 already failed. Will not run again Commit b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 already failed. Will not run again Commit d90b25c0dd5e712488e84d9668f1e2049ecbd562 already failed. Will not run again Found: 7bfe29a485e7b753a079ade0b887e212f7f48989 d90b25c0dd5e712488e84d9668f1e2049ecbd562 b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 =============================== Test Results =============================== Commit Range Checked = 2be2b0d0d25b26a03f8053fa505c8ce962661dad...b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 New Unresolved Commits: 7bfe29a485e7b753a079ade0b887e212f7f48989 d90b25c0dd5e712488e84d9668f1e2049ecbd562 b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 7bfe29a485e7b753a079ade0b887e212f7f48989 d90b25c0dd5e712488e84d9668f1e2049ecbd562 b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 =============================== Updating Config File =============================== Saving into UnresolvedCommits: 7bfe29a485e7b753a079ade0b887e212f7f48989 d90b25c0dd5e712488e84d9668f1e2049ecbd562 b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 Ignoring b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 since it failed to produce output. Ignoring d90b25c0dd5e712488e84d9668f1e2049ecbd562 since it failed to produce output. Ignoring 7bfe29a485e7b753a079ade0b887e212f7f48989 since it failed to produce output. =============================== Cleanup =============================== Removed repo. Removing all generated output ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 7bfe29a485e7b753a079ade0b887e212f7f48989 d90b25c0dd5e712488e84d9668f1e2049ecbd562 b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 ================== FAILED Commits ================== These are the commits which entirely failed to produce output: b70e8c0c5c561fba09acca2b9579b2cf58ec1a85 2be2b0d0d25b26a03f8053fa505c8ce962661dad 7bfe29a485e7b753a079ade0b887e212f7f48989 d90b25c0dd5e712488e84d9668f1e2049ecbd562 Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE