Shell Script Console

Status
Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ ulimit -s 8388608
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_LTso_SILHS_test_config
Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found.
submit_jobs case.run
Submit job case.run
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found.
submit_jobs case.run
Submit job case.run
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
-------- Variable Diff Summary -------- 
File 1: 4203148f5887966b4f7552d4d25b664e5f1cd77c
File 2: 372d7bfe5c09a169579f4113999dd6c86916fa44

Variables discovered (union): 1724
Excluded from comparison: FDL (uninitialized upper-level longwave diagnostic values in MTso)
Excluded from comparison: time_written (wall-clock file-write time)
Variables present in both files: 1722
Variables only in file 1: 0
Variables only in file 2: 0
Variables with differences (all dimensions): 0
Variables identical (all dimensions): 1722

Variables all-zero in file 1 (actual data): 131
Variables all-zero in file 2 (actual data): 131
Variables all-zero in both files (actual data): 131

Variables with >=2 dimensions tested (PASS/FAIL basis): 627
Variables with >=2 dimensions with differences: 0
Variables with >=2 dimensions identical: 627
Variables with >=2 dimensions all-zero in both files (actual data): 96

Variables skipped for PASS/FAIL (fewer than 2 dimensions in both files): 1095

PASS: No differences found in variables with >=2 dimensions.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test

Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git

Output Save Mode: none

Using branch: clubb_silhs_devel

Making list from 'UnresolvedCommits':

CheckRange = False: only comparing baseline to final commit.

Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc

Run commands: ['rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . &&\nsed -i -e \'s/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/\' -e \'s/^COMPSET=.*/COMPSET="FHISTC_LTso"/\' run_scripts/run_cesm_uwm_coarse_res.sh &&\nrun_scripts/run_cesm_uwm_coarse_res.sh']

Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py

=============================== Running Test ===============================

Parsing message from commit: 4203148f5887966b4f7552d4d25b664e5f1cd77c
	Found: BIT_CHANGING

Checking Commit: 4203148f5887966b4f7552d4d25b664e5f1cd77c
	Checking out 4203148f5887966b4f7552d4d25b664e5f1cd77c
	Running: 'rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&
run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . &&
sed -i -e 's/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_LTso"/' run_scripts/run_cesm_uwm_coarse_res.sh &&
run_scripts/run_cesm_uwm_coarse_res.sh'
	Checking out 372d7bfe5c09a169579f4113999dd6c86916fa44
	Running: 'rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&
run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . &&
sed -i -e 's/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_LTso"/' run_scripts/run_cesm_uwm_coarse_res.sh &&
run_scripts/run_cesm_uwm_coarse_res.sh'
	Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py 4203148f5887966b4f7552d4d25b664e5f1cd77c 372d7bfe5c09a169579f4113999dd6c86916fa44'
	WARNING: commit '4203148f5887966b4f7552d4d25b664e5f1cd77c' was supposed to be BIT_CHANGING, but is not.

=============================== Test Results ===============================

Commit Range Checked = 372d7bfe5c09a169579f4113999dd6c86916fa44...4203148f5887966b4f7552d4d25b664e5f1cd77c
-- CheckRange was set to False, no intermediate commits checked

No new Unresolved commits found.

Fake BIT_CHANGING Commits:
	4203148f5887966b4f7552d4d25b664e5f1cd77c

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: 4203148f5887966b4f7552d4d25b664e5f1cd77c

=============================== Cleanup ===============================

Removing all generated output
	REMOVING: 372d7bfe5c09a169579f4113999dd6c86916fa44
	REMOVING: 4203148f5887966b4f7552d4d25b664e5f1cd77c

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0