+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ ulimit -s 8388608
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found.
submit_jobs case.run
Submit job case.run
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
nelson is back online
Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed
See log file for details: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.260708-043125
Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found.
submit_jobs case.run
Submit job case.run
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
-------- Variable Diff Summary --------
File 1: d8aecdb15bc1aa14eb613f8841c6edea58a88750
File 2: afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406
Variables discovered (union): 1724
Variables present in both files: 1724
Variables only in file 1: 0
Variables only in file 2: 0
Variables with differences (all dimensions): 2
Variables identical (all dimensions): 1722
Variables all-zero in file 1 (actual data): 131
Variables all-zero in file 2 (actual data): 131
Variables all-zero in both files (actual data): 131
3D variables tested (PASS/FAIL basis): 0
3D variables with differences: 0
3D variables identical: 0
3D variables all-zero in both files (actual data): 0
Variables skipped for PASS/FAIL (not 3D in either file): 1724
Variables with differences:
- date_written | reason=data mismatch | file1: ndim=2, dims=('time', 'chars') | file2: ndim=2, dims=('time', 'chars')
- time_written | reason=data mismatch | file1: ndim=2, dims=('time', 'chars') | file2: ndim=2, dims=('time', 'chars')
PASS: No differences found in 3D variables.
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git
Output Save Mode: none
Using branch: clubb_silhs_devel
Making list from 'UnresolvedCommits':
- d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd
CheckRange = False: only comparing baseline to final commit.
Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc
Run commands: ['run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 .', '\nrun_scripts/run_cesm_uwm_coarse_res.sh']
Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py
=============================== Running Test ===============================
Parsing message from commit: d8aecdb15bc1aa14eb613f8841c6edea58a88750
Found: BIT_CHANGING
Found: RESOLVED:d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd
Checking Commit: d8aecdb15bc1aa14eb613f8841c6edea58a88750
Checking out d8aecdb15bc1aa14eb613f8841c6edea58a88750
Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 .'
Running: 'run_scripts/run_cesm_uwm_coarse_res.sh'
Checking out afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406
Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 .'
Running: 'run_scripts/run_cesm_uwm_coarse_res.sh'
Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py d8aecdb15bc1aa14eb613f8841c6edea58a88750 afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406'
WARNING: commit 'd8aecdb15bc1aa14eb613f8841c6edea58a88750' was supposed to be BIT_CHANGING, but is not.
=============================== Test Results ===============================
Commit Range Checked = afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406...d8aecdb15bc1aa14eb613f8841c6edea58a88750
-- CheckRange was set to False, no intermediate commits checked
No new Unresolved commits found.
Fake BIT_CHANGING Commits:
d8aecdb15bc1aa14eb613f8841c6edea58a88750
Resolved: d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Saving into BaselineCommit: d8aecdb15bc1aa14eb613f8841c6edea58a88750
=============================== Cleanup ===============================
Removing all generated output
REMOVING: afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406
REMOVING: d8aecdb15bc1aa14eb613f8841c6edea58a88750
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
Exiting with code: 0
