+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37
+ ulimit -s 8388608
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config
Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found.
submit_jobs case.run
Submit job case.run
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
Cmd('git') failed due to: exit code(1)
cmdline: git checkout ccs_config_cesm1.0.0
stderr: 'error: Your local changes to the following files would be overwritten by checkout:
machines/Depends.nvhpc
machines/config_machines.xml
Please commit your changes or stash them before you switch branches.
Aborting'
ERROR: Command: '/usr/bin/xmllint --xinclude --noout --schema /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/data/config/xml_schemas/config_machines_version3.xsd /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/larson-group/config_machines.xml' failed with error '/home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/larson-group/config_machines.xml:20: element GPU_TYPE: Schemas validity error : Element 'GPU_TYPE': This element is not expected. Expected is one of ( MPI_GPU_WRAPPER_SCRIPT, COSTPES_PER_NODE, PROJECT_REQUIRED, TORCH_DIR, mpirun ).
/home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/larson-group/config_machines.xml fails to validate' from dir '/home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/scripts'
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git
Output Save Mode: none
Using branch: clubb_silhs_devel
Making list from 'UnresolvedCommits':
CheckRange = False: only comparing baseline to final commit.
Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc
Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_f10_f10_mg37 --reuse_build --silhs 4 .', '\nrun_scripts/run_cesm_uwm_coarse_res.sh']
Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py
=============================== Running Test ===============================
Parsing message from commit: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209
Checking Commit: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209
Running: final commit to check, not labelled BIT_CHANGING
Checking out 8e7ddbdcdd022b2a08ec537f4bde139f940f0209
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_f10_f10_mg37 --reuse_build --silhs 4 .'
Running: 'run_scripts/run_cesm_uwm_coarse_res.sh'
================== WARNING ==================
Commit: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209
There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc
The run will continue, and this commit will be
considered unresolved.
===========================================
Checking out 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_f10_f10_mg37 --reuse_build --silhs 4 .'
Running: 'run_scripts/run_cesm_uwm_coarse_res.sh'
================== WARNING ==================
Commit: 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89
There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc
The run will continue, and this commit will be
considered unresolved.
===========================================
ISSUE WITH COMMIT DETECTED: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 differs from 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89
=============================== Test Results ===============================
Commit Range Checked = 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89...8e7ddbdcdd022b2a08ec537f4bde139f940f0209
-- CheckRange was set to False, no intermediate commits checked
New Unresolved Commits:
8e7ddbdcdd022b2a08ec537f4bde139f940f0209
No fake BIT_CHANGING commits found.
Remaining Unresolved Commits (oldest commit is listed first):
8e7ddbdcdd022b2a08ec537f4bde139f940f0209
=============================== Updating Config File ===============================
Saving into UnresolvedCommits: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209
Ignoring 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 since it failed to produce output.
=============================== Cleanup ===============================
Removing all generated output
================== Unresolved Commit Status ==================
Remaining Unresolved Commits (oldest commit is listed first):
8e7ddbdcdd022b2a08ec537f4bde139f940f0209
================== FAILED Commits ==================
These are the commits which entirely failed to produce output:
8e7ddbdcdd022b2a08ec537f4bde139f940f0209
692f0d3e4af08e9083d2c1fd9a3cd440949f9d89
Exiting with code: 1
