Started by an SCM change
Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor
Running on Jenkins in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
> git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
> git --version # timeout=10
> git --version # 'git version 2.34.1'
> git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
> git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision f1bcc9737ecf48fe8bee867674559406165f572a (refs/remotes/origin/clubb_silhs_devel)
> git config core.sparsecheckout # timeout=10
> git checkout -f f1bcc9737ecf48fe8bee867674559406165f572a # timeout=10
Commit message: "Autoupdated SILHS Commit dbf71d44dd03cd50b69bcb1d20378cb5679b9bf8 Author: domkesteffen Date: Wed Apr 23 10:36:08 2025 -0500 Err code struct (#1238) Added err_info type to CLUBB to extend old err_code integer flag CLUBB ticket #975"
> git rev-list --no-walk 35b3ea889451c9a36beb1e305052ba99b0ec15e0 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Update sys_admin Repo)
[Pipeline] sh
+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37
+ ulimit -s 8388608
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config
ERROR: Unknown Job Queue specified use --force to set
Error: There is no specific subroutine for the generic 'setup_grid_api' at (1)
Error: There is no specific subroutine for the generic 'setup_parameters_api' at (1)
Error: There is no specific subroutine for the generic 'advance_clubb_core_api' at (1)
Error: Type mismatch in argument 'err_info' at (1); passed INTEGER(4) to TYPE(err_info_type)
ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/bld/atm.bldlog.250424-033043
Error building CAM
Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git
Output Save Mode: none
Using branch: clubb_silhs_devel
Making list from 'UnresolvedCommits':
CheckRange = False: only comparing baseline to final commit.
Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc
Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .', '\nrun_scripts/run_cesm_uwm_coarse_res.sh']
Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py
=============================== Running Test ===============================
Parsing message from commit: f1bcc9737ecf48fe8bee867674559406165f572a
Checking Commit: f1bcc9737ecf48fe8bee867674559406165f572a
Running: final commit to check, not labelled BIT_CHANGING
Checking out f1bcc9737ecf48fe8bee867674559406165f572a
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .'
Running: 'run_scripts/run_cesm_uwm_coarse_res.sh'
================== WARNING ==================
Commit: f1bcc9737ecf48fe8bee867674559406165f572a
There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc
The run will continue, and this commit will be
considered unresolved.
===========================================
Checking out 35b3ea889451c9a36beb1e305052ba99b0ec15e0
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .'
Running: 'run_scripts/run_cesm_uwm_coarse_res.sh'
ISSUE WITH COMMIT DETECTED: f1bcc9737ecf48fe8bee867674559406165f572a differs from 35b3ea889451c9a36beb1e305052ba99b0ec15e0
=============================== Test Results ===============================
Commit Range Checked = 35b3ea889451c9a36beb1e305052ba99b0ec15e0...f1bcc9737ecf48fe8bee867674559406165f572a
-- CheckRange was set to False, no intermediate commits checked
No new Unresolved commits found.
No fake BIT_CHANGING commits found.
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Ignoring f1bcc9737ecf48fe8bee867674559406165f572a since it failed to produce output.
=============================== Cleanup ===============================
Removing all generated output
REMOVING: 35b3ea889451c9a36beb1e305052ba99b0ec15e0
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
================== FAILED Commits ==================
These are the commits which entirely failed to produce output:
f1bcc9737ecf48fe8bee867674559406165f572a
Exiting with code: 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS