Started by an SCM change
Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 347646e13207db4729db167a1a55fcba7f49f8d2 (refs/remotes/origin/clubb_silhs_devel)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 347646e13207db4729db167a1a55fcba7f49f8d2 # timeout=10
Commit message: "Autoupdated CLUBB_core Commit c365e917824d4ca09c1a28b5c1f782bfd1773562 Author: bmg929 Date: Mon Nov 11 11:50:40 2024 -0600 As part of generalizing the code to work with both an ascending and descending grid, I discovered an issue.  The issue occurs in the xp2/xpyp upwind turbulent advection code and involves the sgn_ variables. Ultimately, for other PDFs, I was setting this variable using equations of the form sign( one, variable)"
 &gt; git rev-list --no-walk 0f55f58727106c64e4a8067c5af21d1fe476b578 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Update sys_admin Repo">[Pipeline] { (Update sys_admin Repo)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Python Test">[Pipeline] { (Run Python Test)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37
+ ulimit -s 8388608
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
PASS: All 3D output vars are zero.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test
Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test

Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin <a href='https://github.com/larson-group/cam.git'>https://github.com/larson-group/cam.git</a>

Output Save Mode: none

Using branch: clubb_silhs_devel

Making list from 'UnresolvedCommits':

CheckRange = False: only comparing baseline to final commit.

Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc

Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .', '\nrun_scripts/run_cesm_uwm_coarse_res.sh']

Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py

=============================== Running Test ===============================

Parsing message from commit: 347646e13207db4729db167a1a55fcba7f49f8d2
	Found: BIT_CHANGING

Checking Commit: 347646e13207db4729db167a1a55fcba7f49f8d2
	Checking out 347646e13207db4729db167a1a55fcba7f49f8d2
	Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
	Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .'
	Running: 'run_scripts/run_cesm_uwm_coarse_res.sh'
	Checking out 0f55f58727106c64e4a8067c5af21d1fe476b578
	Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
	Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .'
	Running: 'run_scripts/run_cesm_uwm_coarse_res.sh'
	Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py 347646e13207db4729db167a1a55fcba7f49f8d2 0f55f58727106c64e4a8067c5af21d1fe476b578'
	WARNING: commit '347646e13207db4729db167a1a55fcba7f49f8d2' was supposed to be BIT_CHANGING, but is not.

=============================== Test Results ===============================

Commit Range Checked = 0f55f58727106c64e4a8067c5af21d1fe476b578...347646e13207db4729db167a1a55fcba7f49f8d2
-- CheckRange was set to False, no intermediate commits checked

No new Unresolved commits found.

Fake BIT_CHANGING Commits:
	347646e13207db4729db167a1a55fcba7f49f8d2

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: 347646e13207db4729db167a1a55fcba7f49f8d2

=============================== Cleanup ===============================

Removing all generated output
	REMOVING: 0f55f58727106c64e4a8067c5af21d1fe476b578
	REMOVING: 347646e13207db4729db167a1a55fcba7f49f8d2

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="24" startId="24" enclosingId="23">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="24">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="26" enclosingId="25">[Pipeline] sh
</span><span class="pipeline-node-26">+ chmod -R 755 /home/jenkins/cam_output
</span><span class="pipeline-new-node" nodeId="27" startId="25">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="28" startId="24">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="29" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="30" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="31" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="32" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="33" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="34" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="35" startId="2">[Pipeline] End of Pipeline
</span>Finished: SUCCESS