Started by an SCM change
Obtained jenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
> git init /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
> git --version # timeout=10
> git --version # 'git version 2.34.1'
> git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
> git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 19b28abd72b6806630a2b2888430080e858d0e85 (refs/remotes/origin/clubb_silhs_devel)
> git config core.sparsecheckout # timeout=10
> git checkout -f 19b28abd72b6806630a2b2888430080e858d0e85 # timeout=10
Commit message: "Autoupdated CLUBB_core Commit fc730619ece3d60ae5fba256f6f93f4d9ec30fc4 Author: domkesteffen Date: Thu Oct 10 12:15:08 2024 -0500 Added min_max_smth_mag as a Fortran parameter to constants_clubb.F90 (#1192)"
> git rev-list --no-walk 3677abaa043ee2ed67d4a2986258a196e82bdc15 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Clone SysAdmin to tmp)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_bit_diff_test_workspace/sys_admin
+ git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_bit_diff_test_workspace/sys_admin
Cloning into '/home/jenkins/cam_bit_diff_test_workspace/sys_admin'...
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37
+ ulimit -s 8388608
+ python3 /home/jenkins/cam_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_bit_diff_test_workspace/bit_diff_cam_config
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
PASS: All 3D output vars are zero.
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/cam_bit_diff_test_workspace
Trying to clone repo...
Cloned repo location: /home/jenkins/cam_bit_diff_test_workspace/repo
Output Save Mode: none
Using branch: clubb_silhs_devel
Making list from 'UnresolvedCommits':
Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc
Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrepo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res.sh']
Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py
=============================== Running Test ===============================
Parsing message from commit: 19b28abd72b6806630a2b2888430080e858d0e85
Checking Commit: 19b28abd72b6806630a2b2888430080e858d0e85
Running: final commit to check, not labelled BIT_CHANGING
Checking out 19b28abd72b6806630a2b2888430080e858d0e85
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo'
Running: '
repo/run_scripts/run_cesm_uwm_coarse_res.sh'
Checking out 3677abaa043ee2ed67d4a2986258a196e82bdc15
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo'
Running: '
repo/run_scripts/run_cesm_uwm_coarse_res.sh'
Diffing: 'python3 repo/run_scripts/netcdf_3D_vars_diff.py 19b28abd72b6806630a2b2888430080e858d0e85 3677abaa043ee2ed67d4a2986258a196e82bdc15'
=============================== Test Results ===============================
Commit Range Checked = 3677abaa043ee2ed67d4a2986258a196e82bdc15...19b28abd72b6806630a2b2888430080e858d0e85
No new Unresolved commits found.
No fake BIT_CHANGING commits found.
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Saving into BaselineCommit: 19b28abd72b6806630a2b2888430080e858d0e85
=============================== Cleanup ===============================
Removed repo.
Removing all generated output
REMOVING: 3677abaa043ee2ed67d4a2986258a196e82bdc15
REMOVING: 19b28abd72b6806630a2b2888430080e858d0e85
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
Exiting with code: 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS