Started by an SCM change Obtained jenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision c26d4422b4325a4b592a93dc92e93bb70adf84b0 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f c26d4422b4325a4b592a93dc92e93bb70adf84b0 # timeout=10 Commit message: "Autoupdated SILHS Commit d423046c547ffa8af68ce4faa8d77a8476e4f887 Author: st3113n Date: Fri Oct 4 09:08:24 2024 -0500 refactoring to remove compiler warnings (#1187) * refactor code to remove warnings for exceeding 100 characters per line" > git rev-list --no-walk dabbf904b1ae020619366b1720c2ae531de0370c # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/cam_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/cam_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37 + ulimit -s 8388608 + python3 /home/jenkins/cam_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_bit_diff_test_workspace/bit_diff_cam_config ERROR: Unknown Job Queue specified use --force to set Error: There is no specific subroutine for the generic 'advance_clubb_core_api' at (1) Error: Type mismatch in argument 'nzmax' at (1); passed REAL(8) to INTEGER(4) Error: Type mismatch in argument 'params' at (1); passed LOGICAL(4) to REAL(8) Error: Type mismatch in argument 'l_input_fields' at (1); passed TYPE(clubb_config_flags_type) to LOGICAL(4) Error: Type mismatch in argument 'clubb_config_flags' at (1); passed INTEGER(4) to TYPE(clubb_config_flags_type) ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/bld/atm.bldlog.241005-031359 Error building CAM Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 ERROR: Unknown Job Queue specified use --force to set Error: There is no specific subroutine for the generic 'generate_silhs_sample_api' at (1) Error: There is no specific subroutine for the generic 'clip_transform_silhs_output_api' at (1) ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/bld/atm.bldlog.241005-033145 Error building CAM Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 =============================== Configuring Test =============================== Working directory set to: /home/jenkins/cam_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/cam_bit_diff_test_workspace/repo Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrepo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 Parsing message from commit: 37f9c23a4355a8135ddb74229cd970da02959130 Found: BIT_CHANGING Parsing message from commit: c26d4422b4325a4b592a93dc92e93bb70adf84b0 Checking Commit: 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 37f9c23a4355a8135ddb74229cd970da02959130 Checking out 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out dabbf904b1ae020619366b1720c2ae531de0370c Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' ISSUE WITH COMMIT DETECTED: 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 differs from dabbf904b1ae020619366b1720c2ae531de0370c Checking out 37f9c23a4355a8135ddb74229cd970da02959130 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 37f9c23a4355a8135ddb74229cd970da02959130 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Commit 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 already failed. Will not run again Commit '37f9c23a4355a8135ddb74229cd970da02959130' is BIT_CHANGING and properly labelled as such. Checking Commit: c26d4422b4325a4b592a93dc92e93bb70adf84b0 Running: final commit to check, not labelled BIT_CHANGING Checking out c26d4422b4325a4b592a93dc92e93bb70adf84b0 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' Commit 37f9c23a4355a8135ddb74229cd970da02959130 already failed. Will not run again ISSUE WITH COMMIT DETECTED: c26d4422b4325a4b592a93dc92e93bb70adf84b0 differs from 37f9c23a4355a8135ddb74229cd970da02959130 Finding all BIT_CHANGING commits in range: dabbf904b1ae020619366b1720c2ae531de0370c...07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 Commit 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 already failed. Will not run again Output from dabbf904b1ae020619366b1720c2ae531de0370c already saved Found: 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 Finding all BIT_CHANGING commits in range: 37f9c23a4355a8135ddb74229cd970da02959130...c26d4422b4325a4b592a93dc92e93bb70adf84b0 Output from c26d4422b4325a4b592a93dc92e93bb70adf84b0 already saved Commit 37f9c23a4355a8135ddb74229cd970da02959130 already failed. Will not run again Found: c26d4422b4325a4b592a93dc92e93bb70adf84b0 =============================== Test Results =============================== Commit Range Checked = dabbf904b1ae020619366b1720c2ae531de0370c...c26d4422b4325a4b592a93dc92e93bb70adf84b0 New Unresolved Commits: 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 c26d4422b4325a4b592a93dc92e93bb70adf84b0 No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 c26d4422b4325a4b592a93dc92e93bb70adf84b0 =============================== Updating Config File =============================== Saving into UnresolvedCommits: 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 c26d4422b4325a4b592a93dc92e93bb70adf84b0 Saving into BaselineCommit: c26d4422b4325a4b592a93dc92e93bb70adf84b0 =============================== Cleanup =============================== Removed repo. Removing all generated output REMOVING: dabbf904b1ae020619366b1720c2ae531de0370c REMOVING: c26d4422b4325a4b592a93dc92e93bb70adf84b0 ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 c26d4422b4325a4b592a93dc92e93bb70adf84b0 ================== FAILED Commits ================== These are the commits which entirely failed to produce output: 07ecf4a3bc8df6091e7820434d4ccc473e5dcb05 37f9c23a4355a8135ddb74229cd970da02959130 Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE