Started by an SCM change
Obtained jenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
> git init /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
> git --version # timeout=10
> git --version # 'git version 2.34.1'
> git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
> git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 0df34e02ef1da89d9c0d413f6c5a48decad55564 (refs/remotes/origin/clubb_silhs_devel)
> git config core.sparsecheckout # timeout=10
> git checkout -f 0df34e02ef1da89d9c0d413f6c5a48decad55564 # timeout=10
Commit message: "Autoupdated SILHS Commit 8bbf5db087f49e4d6a4a1aaef2b825b3716276f8 Author: Gunther Huebler Date: Wed Sep 25 14:42:58 2024 -0500 Removing the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack."
> git rev-list --no-walk 8cc633ec5c668b87b76afb3cbedac29732fdcc9d # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Clone SysAdmin to tmp)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_bit_diff_test_workspace/sys_admin
+ git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_bit_diff_test_workspace/sys_admin
Cloning into '/home/jenkins/cam_bit_diff_test_workspace/sys_admin'...
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37
+ python3 /home/jenkins/cam_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_bit_diff_test_workspace/bit_diff_cam_config
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/cam_bit_diff_test_workspace
Trying to clone repo...
Cloned repo location: /home/jenkins/cam_bit_diff_test_workspace/repo
Output Save Mode: none
Using branch: clubb_silhs_devel
Making list from 'UnresolvedCommits':
Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc
Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrepo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res.sh']
Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py
=============================== Running Test ===============================
Parsing message from commit: 44185129c9d82fc7c19c5c28d3b2da9f5b13953b
Parsing message from commit: f91e6aab06416ab175dd76caed4107fd7b3fc47a
Parsing message from commit: 0df34e02ef1da89d9c0d413f6c5a48decad55564
Checking Commit: 44185129c9d82fc7c19c5c28d3b2da9f5b13953b
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: f91e6aab06416ab175dd76caed4107fd7b3fc47a
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 0df34e02ef1da89d9c0d413f6c5a48decad55564
Running: final commit to check, not labelled BIT_CHANGING
Checking out 0df34e02ef1da89d9c0d413f6c5a48decad55564
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: '
repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo'
================== ERROR ==================
Commit: 0df34e02ef1da89d9c0d413f6c5a48decad55564
Unexpected error: [Errno 2] No such file or directory: 'repo/run_scripts/set_up_cam_coarse_res.py'
There was a problem with a run command.
===========================================
System Exit detected. Calling test.cleanup()
=============================== Cleanup ===============================
Removed repo.
Removing all generated output
Exiting with code: 1
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE