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There is opportunity to task parallelize using streams and\u000awill be explored in the future.\u000a\u000aAnswers are bit for bit.\u000a\u000a* Fixing the copyin directives\u000a\u000a* Making work without managed memory.\u000a", "date" : "2023-02-08 18:34:02 -0600", "id" : "47cd566e64abb0e774abd20c2ec97deed8dd3ab5", "msg" : "Porting pdf_closure subroutine with OpenACC (#1059)", "paths" : [ { "editType" : "edit", "file" : "src/CLUBB_core/pdf_closure_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/pdf_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "utilities/read_sam_moments/netcdf_var_collector.py" ], "commitId" : "b361c61e93c25e1a491a5ff4fdbe5cbcc1f0f735", "timestamp" : 1676148083000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/cernikt", "fullName" : "cernikt" }, "authorEmail" : "cernikt@msoe.edu", "comment" : "made graphing for netcdf_var collector general. #1040\u000a", "date" : "2023-02-11 14:41:23 -0600", "id" : "b361c61e93c25e1a491a5ff4fdbe5cbcc1f0f735", "msg" : "made graphing for netcdf_var collector general. #1040", "paths" : [ { "editType" : "edit", "file" : "utilities/read_sam_moments/netcdf_var_collector.py" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/advance_clubb_core_module.F90", "input/stats/standard_stats.in", "src/CLUBB_core/stats_variables.F90", "src/CLUBB_core/stats_clubb_utilities.F90", "input/stats/all_stats.in", "src/CLUBB_core/stats_zm_module.F90" ], "commitId" : "f4a832bf41d24a08e9b5be84713c057dfa98084e", "timestamp" : 1676661825000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Adding wp3_on_wp2_cfl_num to CLUBB's output stats.\u000a", "date" : "2023-02-17 13:23:45 -0600", "id" : "f4a832bf41d24a08e9b5be84713c057dfa98084e", "msg" : "Adding wp3_on_wp2_cfl_num to CLUBB's output stats.", "paths" : [ { "editType" : "edit", "file" : "input/stats/standard_stats.in" }, { "editType" : "edit", "file" : "src/CLUBB_core/stats_variables.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "input/stats/all_stats.in" }, { "editType" : "edit", "file" : "src/CLUBB_core/stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "postprocessing/pyplotgen/config/VariableGroupNondimMoments.py" ], "commitId" : "28e0fce01e7815ba9476ef6de24e556755f142d4", "timestamp" : 1676666305000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Added wp3_on_wp2_cfl_num to the VariableGroupNondimMoments.py file for\u000apyplotgen use.\u000a", "date" : "2023-02-17 14:38:25 -0600", "id" : "28e0fce01e7815ba9476ef6de24e556755f142d4", "msg" : "Added wp3_on_wp2_cfl_num to the VariableGroupNondimMoments.py file for", "paths" : [ { "editType" : "edit", "file" : "postprocessing/pyplotgen/config/VariableGroupNondimMoments.py" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "postprocessing/pyplotgen/config/VariableGroupNondimMoments.py" ], "commitId" : "f41e9c4d0b929e0bcbfb84ee6705ab3b979a6520", "timestamp" : 1677083898000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update VariableGroupNondimMoments.py\u000a\u000aFixed a typo\u000a", "date" : "2023-02-22 10:38:18 -0600", "id" : "f41e9c4d0b929e0bcbfb84ee6705ab3b979a6520", "msg" : "Update VariableGroupNondimMoments.py", "paths" : [ { "editType" : "edit", "file" : "postprocessing/pyplotgen/config/VariableGroupNondimMoments.py" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/clubb_driver.F90" ], "commitId" : "d3264a2623c048a97b2dd6d8bb43f14c0e496f0c", "timestamp" : 1677519729000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/37674341+huebleruwm", "fullName" : "37674341+huebleruwm" }, "authorEmail" : "37674341+huebleruwm@users.noreply.github.com", "comment" : "Fixing bug. 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In this way, the model initiliazation will\u000a always read the same sounding profile for initialization when user\u000a refine the vertical model grid.\u000a\u000aOriginally committed by Shixuan.\u000a", "date" : "2023-03-03 16:39:28 -0600", "id" : "9aeea149d5970cb99218344f8bde576e1f036d21", "msg" : "Implementing changes to the initial conditions.", "paths" : [ { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_ds_model.in" }, { "editType" : "edit", "file" : "input/case_setups/rico_model.in" }, { "editType" : "edit", "file" : "src/sounding.F90" }, { "editType" : "edit", "file" : "input/case_setups/bomex_model.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_sounding.in" }, { "editType" : "edit", "file" : "input/case_setups/wangara_sounding.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_so_model.in" }, { "editType" : "edit", "file" : "input/case_setups/wangara_model.in" }, { "editType" : "edit", "file" : "input/case_setups/rico_sounding.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_do_model.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_morr_model.in" }, { "editType" : "edit", "file" : "input/case_setups/bomex_sounding.in" }, { "editType" : "edit", "file" : "src/clubb_driver.F90" }, { "editType" : "edit", "file" : "input/case_setups/rico_silhs_model.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_nd_model.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "README" ], "commitId" : "a6682998e27e3d01b8ffeb4ec2774872e7311aa4", "timestamp" : 1677905458000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "This commit most definitely does not change any bits,\u000abut commit 67878ef was BIT_CHANGING for the DYCOMS-II RF02 family\u000aof cases, RICO (and RICO SILHS), BOMEX, and Wangara.\u000a", "date" : "2023-03-03 22:50:58 -0600", "id" : "a6682998e27e3d01b8ffeb4ec2774872e7311aa4", "msg" : "This commit most definitely does not change any bits,", "paths" : [ { "editType" : "edit", "file" : "README" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "run_scripts/convergence_function.py", "run_scripts/run_cnvg_test_multi_cases.csh", "run_scripts/plot_l2_convergence.py", "run_scripts/convergence_config.py" ], "commitId" : "0e087bee28254a2bc2da5869a28352e1374b2b91", "timestamp" : 1678120205000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Add scripts to configure and run convergence test\u000a This commit contains new scripts created to configure and run\u000a convergence test simulations. There are four scripts:\u000a\u000a 1. run_scripts/run_cnvg_test_multi_cases.csh. This script is used to\u000a compile and run convergence simulations with specific configurations\u000a (see details in scripts for explations). After the simulations,the\u000a space-time convergence plots will also be generated.\u000a\u000a 2.run_scripts/convergence_config.py: this script \"called\" by the\u000a first script to generate the namelist file for CLUBB-SCM simulations.\u000a With this script, the modified configuration will be applied in the\u000a case run directory, while the files in default clubb will not be\u000a touched\u000a\u000a 3.run_scripts/convergence_function.py: this script contains function\u000a to modify the initial condition profile for convergence test\u000a simulations. It is called by run_scripts/convergence_config.py\u000a when the model is configured to use modified initial conditions\u000a\u000a 4.run_scripts/plot_l2_convergence.py: this is a sample script to\u000a generate the space-time convergence plots\u000a\u000aOriginally committed by Shixuan\u000a", "date" : "2023-03-06 10:30:05 -0600", "id" : "0e087bee28254a2bc2da5869a28352e1374b2b91", "msg" : "Add scripts to configure and run convergence test", "paths" : [ { "editType" : "add", "file" : "run_scripts/convergence_function.py" }, { "editType" : "add", "file" : "run_scripts/run_cnvg_test_multi_cases.csh" }, { "editType" : "add", "file" : "run_scripts/convergence_config.py" }, { "editType" : "add", "file" : "run_scripts/plot_l2_convergence.py" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "run_scripts/convergence_run/convergence_function.py", "run_scripts/convergence_run/run_cnvg_test_multi_cases.csh", "run_scripts/plot_l2_convergence.py", "run_scripts/convergence_run/convergence_config.py", "run_scripts/convergence_config.py", "run_scripts/convergence_function.py", "run_scripts/run_cnvg_test_multi_cases.csh", "run_scripts/convergence_run/plot_l2_convergence.py" ], "commitId" : "53c717bb7dd9bddcd720cba58c46d77b7ad36c9c", "timestamp" : 1678120475000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "reorgnize the scripts for convergence test simulations\u000aMove the script associated with convergence test simulation\u000ain the folder of run_scripts/convergence_run\u000a\u000aOriginally committed by Shixuan\u000a", "date" : "2023-03-06 10:34:35 -0600", "id" : "53c717bb7dd9bddcd720cba58c46d77b7ad36c9c", "msg" : "reorgnize the scripts for convergence test simulations", "paths" : [ { "editType" : "delete", "file" : "run_scripts/plot_l2_convergence.py" }, { "editType" : "delete", "file" : "run_scripts/convergence_function.py" }, { "editType" : "delete", "file" : "run_scripts/run_cnvg_test_multi_cases.csh" }, { "editType" : "delete", "file" : "run_scripts/convergence_config.py" }, { "editType" : "add", "file" : "run_scripts/convergence_run/convergence_function.py" }, { "editType" : "add", "file" : "run_scripts/convergence_run/convergence_config.py" }, { "editType" : "add", "file" : "run_scripts/convergence_run/plot_l2_convergence.py" }, { "editType" : "add", "file" : "run_scripts/convergence_run/run_cnvg_test_multi_cases.csh" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "README" ], "commitId" : "db8d5931d779bc1f776fb80952a1c263c22f8467", "timestamp" : 1678293578000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update README\u000a\u000aI guess the proper way to do it is this -- BIT_CHANGING:9aeea14\u000a", "date" : "2023-03-08 10:39:38 -0600", "id" : "db8d5931d779bc1f776fb80952a1c263c22f8467", "msg" : "Update README", "paths" : [ { "editType" : "edit", "file" : "README" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/turbulent_adv_pdf.F90", "src/CLUBB_core/advance_clubb_core_module.F90", "src/CLUBB_core/grid_class.F90", "src/CLUBB_core/pdf_closure_module.F90", "src/CLUBB_core/mean_adv.F90", "src/CLUBB_core/saturation.F90", "src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90", "src/CLUBB_core/pdf_utilities.F90", "src/CLUBB_core/mixing_length.F90" ], "commitId" : "a3bcb0bd343d004b2f085006708b88131be99507", "timestamp" : 1678297579000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Gpu updates (#1070)\u000a\u000a* Fixing bug. This was only triggered when l_input_fields=.true., which I am only testing because it needs to be true so that I can test ADG2_driver.\u000a\u000a* Removing usage of gr from pdf_closure. It was only ever used for nz, which is now fed in directly.\u000a\u000a* Making openacc statements more consistent. Ensuring all statments on double loops have specified gang and vector, and that all parallel loops have an end parallel loop statment at the end of them. Everything BFB on CPUs and GPUs.\u000a\u000a* Pushing acc data region to outermost parts of mixing_length.\u000a\u000a* Removing pdf_implicit_coefs_terms from acc copyin and copyout. It is only used when iiPDF_type == iiPDF_new .or. iiPDF_type == iiPDF_new_hybrid, so we do not need to do any copying with it. The inclusion of it also caused the data statement to copy unallocated arrays, which are just garbage pointers, and that was causing random occasional crashes (either segfaults or gpu out of memory).\u000a\u000a* The update device clauses for return variables seems to only be requried for arrays contained in types. See https://github.com/larson-group/clubb/issues/1049\\#issuecomment-1440624778\u000a\u000a* Moving acc end data to end of pdf_closure. This reuqired removing any conditional return statements that appear before the final return, since we're not allowed to branch out of an acc region early. I also moved a large printout statement outside of a loop. The only reason it was in the loop to begin with was because pdf_params used to be an array of types, but now is a type of arrays, allowing us to print the full arrays directly.\u000a\u000a* Making loop an acc loop. 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This change causes the arrays to get correctly zerod out on the GPU when we need.\u000a\u000a* Update VariableGroupNondimMoments.py\u000a\u000aFixed a typo\u000a\u000a* Merging new changes from master\u000a\u000a* Removing need for -gpu=deepcopy, pushing some acc data statements up call tree, and replacing some acc data statements with acc delare statements so that return statements can be added back in.\u000a\u000a* Adding back an acc loop that was accidentally removed during a merge.\u000a\u000a---------\u000a\u000aCo-authored-by: Brian Griffin <31553422+bmg929@users.noreply.github.com>\u000a", "date" : "2023-03-08 11:46:19 -0600", "id" : "a3bcb0bd343d004b2f085006708b88131be99507", "msg" : "Gpu updates (#1070)", "paths" : [ { "editType" : "edit", "file" : "src/CLUBB_core/grid_class.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/mixing_length.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/mean_adv.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/turbulent_adv_pdf.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/pdf_utilities.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/pdf_closure_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/saturation.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "input/case_setups/dycoms2_rf02_morr_model.in", "src/clubb_driver.F90", "input/case_setups/dycoms2_rf02_nd_model.in", "input/case_setups/bomex_model.in", "input/case_setups/dycoms2_rf02_ds_model.in", "input/case_setups/rico_silhs_model.in", "input/case_setups/dycoms2_rf02_so_model.in", "input/case_setups/rico_model.in", "input/case_setups/wangara_model.in", "input/case_setups/dycoms2_rf02_do_model.in" ], "commitId" : "8e473e08b858df61c5c5116e37e26f3df2431a0b", "timestamp" : 1678316303000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Code changes to implement modified boundary condition\u000aThis commit contains code changes to implement modified boundary\u000aconditions for convergence test simulations. These code changes\u000acan be activated by setting l_modify_bc_for_cnvg_test = .true.\u000ain the CLUBB namelist.\u000a\u000aOriginally committed by Shixuan.\u000a", "date" : "2023-03-08 16:58:23 -0600", "id" : "8e473e08b858df61c5c5116e37e26f3df2431a0b", "msg" : "Code changes to implement modified boundary condition", "paths" : [ { "editType" : "edit", "file" : "src/clubb_driver.F90" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_ds_model.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_morr_model.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_nd_model.in" }, { "editType" : "edit", "file" : "input/case_setups/wangara_model.in" }, { "editType" : "edit", "file" : "input/case_setups/bomex_model.in" }, { "editType" : "edit", "file" : "input/case_setups/rico_silhs_model.in" }, { "editType" : "edit", "file" : "input/case_setups/rico_model.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_do_model.in" }, { "editType" : "edit", "file" : "input/case_setups/dycoms2_rf02_so_model.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/mono_flux_limiter.F90" ], "commitId" : "c5c29600aa8cf9176127e44fbf6ddccf9474722a", "timestamp" : 1678350700000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Implements Thomas Toniazzo's bug fix for spike removal\u000a\u000ain the monotonic flux limiter. See\u000a\u000ahttps://github.com/larson-group/clubb_release/pull/11/files\u000a\u000aThis code change is\u000aexpected to be BIT_CHANGING for cases in which\u000a`l_predict_upwp_vpwp = T`, `l_mono_flux_lim_um = T`\u000aor `l_mono_flux_lim_vm = T`, and the monotonic\u000aflux limiter is triggered.\u000a\u000aThis bug fix prevents non-conservation of momentum\u000awhen the vertical integral of either of the wind components `um` or `vm` is negative.\u000a", "date" : "2023-03-09 02:31:40 -0600", "id" : "c5c29600aa8cf9176127e44fbf6ddccf9474722a", "msg" : "Implements Thomas Toniazzo's bug fix for spike removal", "paths" : [ { "editType" : "edit", "file" : "src/CLUBB_core/mono_flux_limiter.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "README" ], "commitId" : "9512061ddd7b2a7d1009a787409055495fbd39c5", "timestamp" : 1678370125000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Fixed an old notation change in the README\u000a", "date" : "2023-03-09 07:55:25 -0600", "id" : "9512061ddd7b2a7d1009a787409055495fbd39c5", "msg" : "Fixed an old notation change in the README", "paths" : [ { "editType" : "edit", "file" : "README" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "README" ], "commitId" : "5cb6f1b9b80536e8a57e8d5f64a73136c824b0a0", "timestamp" : 1678370507000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update README\u000a\u000aDid this not work because I didn't include all 40 characters of the git hash?\u000aBIT_CHANGING:9aeea149d5970cb99218344f8bde576e1f036d21\u000a", "date" : "2023-03-09 08:01:47 -0600", "id" : "5cb6f1b9b80536e8a57e8d5f64a73136c824b0a0", "msg" : "Update README", "paths" : [ { "editType" : "edit", "file" : "README" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "input_misc/tuner/error_atex.in", "input_misc/tuner/error_rico.in", "input_misc/tuner/error_gabls3_night.in", "src/CLUBB_core/sfc_varnce_module.F90", "input_misc/tuner/error_nov11_altocu.in", "input_misc/tuner/error_four_cases.in", "input_misc/tuner/error_dycoms2_rf01.in", "input_misc/tuner/error_dycoms2_rf02_ds.in", "src/clubb_standalone.F90", "input_misc/tuner/error_wangara.in", "input/tunable_parameters_compatible_r8029/tunable_parameters.in", "src/G_unit_test_types/pdf_parameter_tests.F90", "input/tunable_parameters/tunable_parameters.in", "input_misc/tuner/error_dycoms2_rf02_do.in", "src/CLUBB_core/parameter_indices.F90", "input_misc/tuner/error_dycoms2_rf02_nd.in", "input/tunable_parameters_e3sm/tunable_parameters.in", "src/CLUBB_core/parameters_tunable.F90", "input_misc/tuner/error_arm.in", "src/G_unit_test_types/spurious_source_test.F90", "input_misc/tuner/error_bomex.in", "input_misc/tuner/error_bomex_fire.in", "src/clubb_thread_test.F90", "src/CLUBB_core/advance_clubb_core_module.F90", "input/tunable_parameters_Lscale/tunable_parameters.in", "src/jacobian.F90", "input_misc/tuner/error_all.in", "input_misc/tuner/error_arm_97.in", "input_misc/tuner/error_lba.in", "src/CLUBB_core/clubb_api_module.F90", "src/error.F90", "input_misc/tuner/error_fire.in", "input_misc/tuner/error_gabls2.in", "input_misc/tuner/error_ticket_756.in" ], "commitId" : "903169aafe5cfd2f7cae35adef3d31e6f51641fe", "timestamp" : 1678723565000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Making 'a_const' into a CLUBB tunable parameter. 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Also fixed some random things. Still need to return returns.\u000a\u000a* Adding back a couple return statments. Moving a comment where it should be. GPUizing a missed loop.\u000a\u000a* Making arguements list satisfy standards.\u000a\u000a* Making arguements list satisfy standards. Also adding max(1,hydrometdim) to hydromet inputs.\u000a\u000a* Capitalizing K\u000a\u000a* Making the error case in compute_cloud_cover behavior a bit differently. 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Also BIT_CHANGING:fb4556e4cc4cb3d4b6df3520370a28a824f357ef for configs where l_use_cloud_cover = .false., which means I was wrong about this ever not being bit changing, so I must've either only tested with l_use_cloud_cover = .true. or only tested the multicol diffs when I put compute_cloud_cover inside the if statement.\u000a", "date" : "2023-03-18 13:24:06 -0500", "id" : "0cf0157ebf0dfe165d07da57520f34cbf1173bb8", "msg" : "Undoing README update, 1 space = 1 byte and we should maximize file sizes to deter hackers from stealing our data. Also BIT_CHANGING:fb4556e4cc4cb3d4b6df3520370a28a824f357ef for configs where l_use_cloud_cover = .false., which means I was wrong about this ever not being bit changing, so I must've either only tested with l_use_cloud_cover = .true. or only tested the multicol diffs when I put compute_cloud_cover inside the if statement.", "paths" : [ { "editType" : "edit", "file" : "README" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/advance_clubb_core_module.F90" ], "commitId" : "dffad1daafea675ddb568df7159dc83c952baab7", "timestamp" : 1679530369000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding Skthl_zm to the update host list, I missed this in the last PR. 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The changes is necessary to obtain the first\u000aorder convergence in CLUBB-SCM when lienar diffusion is used.\u000a\u000aPreviously committed by Shixuan.\u000a", "date" : "2023-03-31 02:17:42 -0500", "id" : "475d569931a16ce1187c26757a0913e53c62abe5", "msg" : "Code changes to implement modificiations on wp3 clippings", "paths" : [ { "editType" : "edit", "file" : "src/CLUBB_core/clubb_api_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/clip_explicit.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "src/G_unit_test_types/spurious_source_test.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/model_flags.F90" }, { "editType" : "edit", "file" : "src/clubb_driver.F90" }, { "editType" : "edit", "file" : "src/G_unit_test_types/pdf_parameter_tests.F90" }, { "editType" : "edit", "file" : "input/tunable_parameters/configurable_model_flags.in" }, { "editType" : "edit", "file" : "src/clubb_tuner.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/advance_clubb_core_module.F90", "src/clubb_driver.F90", "src/G_unit_test_types/spurious_source_test.F90", "src/CLUBB_core/model_flags.F90", "src/CLUBB_core/clubb_api_module.F90", "src/G_unit_test_types/pdf_parameter_tests.F90", "input/tunable_parameters/configurable_model_flags.in", "src/CLUBB_core/advance_helper_module.F90", "src/CLUBB_core/mixing_length.F90", "src/clubb_tuner.F90" ], "commitId" : "4b16d833e86ad23ef6ea81de67c38c596ebccd25", "timestamp" : 1680538287000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "This commit contains code changes to implement modifications on limiters in three places:\u000a\u000a1. remove the limiters in denominator of equation for\u000a brunt_vaisala_freq_sqd_smth, which affects the computed\u000a eddy dissipation time scale in turbulent fluxes (wpxp).\u000a (in mixing_length.F90)\u000a\u000a2. reduce the threshold values of limiters in the equation\u000a for richardson number (sqrt_Ri_zm)\u000a (in mixing_length.F90)\u000a\u000a3. introduce the smoothed max/min function for limiters in\u000a equation of Cx_fnc_Richardson.\u000a (in advance_helper_module.F90).\u000a\u000aAfter the modification, we also apply a zt2m(zm2zt) smoothing\u000aon the calculated quantities. These modifications are found to\u000abe benificial for improving solution convergence in CLUBB-SCM\u000a\u000aThe code changes are controlled by a newly introduced flag named\u000a\"l_modify_limiters_for_cnvg_test\", which is set to .false. (meaning that\u000athe modificaitons on limiters is turned off) by default.\u000a\u000aOriginally committed by Shixuan.\u000a", "date" : "2023-04-03 11:11:27 -0500", "id" : "4b16d833e86ad23ef6ea81de67c38c596ebccd25", "msg" : "This commit contains code changes to implement modifications on limiters in three places:", "paths" : [ { "editType" : "edit", "file" : "src/CLUBB_core/mixing_length.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/clubb_api_module.F90" }, { "editType" : "edit", "file" : "src/G_unit_test_types/pdf_parameter_tests.F90" }, { "editType" : "edit", "file" : "src/clubb_tuner.F90" }, { "editType" : "edit", "file" : "src/clubb_driver.F90" }, { "editType" : "edit", "file" : "input/tunable_parameters/configurable_model_flags.in" }, { "editType" : "edit", "file" : "src/G_unit_test_types/spurious_source_test.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/advance_helper_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "input/tunable_parameters/tunable_parameters.in" ], "commitId" : "56b351a7c3870976816a85ac7cc292d57f3daa81", "timestamp" : 1680705925000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/cernikt", "fullName" : "cernikt" }, "authorEmail" : "tjcernik@uwm.edu", "comment" : "changing tunable_parameters\u000a", "date" : "2023-04-05 09:45:25 -0500", "id" : "56b351a7c3870976816a85ac7cc292d57f3daa81", "msg" : "changing tunable_parameters", "paths" : [ { "editType" : "edit", "file" : "input/tunable_parameters/tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "input/tunable_parameters/tunable_parameters.in" ], "commitId" : "ec5eb04a57d416323f4f67bcacb242246816d5fd", "timestamp" : 1680706442000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/cernikt", "fullName" : "cernikt" }, "authorEmail" : "tjcernik@uwm.edu", "comment" : "changing tunable_parameters\u000a", "date" : "2023-04-05 09:54:02 -0500", "id" : "ec5eb04a57d416323f4f67bcacb242246816d5fd", "msg" : "changing tunable_parameters", "paths" : [ { "editType" : "edit", "file" : "input/tunable_parameters/tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "input/tunable_parameters/tunable_parameters.in" ], "commitId" : "3d6022f3fa683a1dcd6d42a6e281b6e25ac9d7f4", "timestamp" : 1680706472000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/cernikt", "fullName" : "cernikt" }, "authorEmail" : "tjcernik@uwm.edu", "comment" : "changing tunable_parameters\u000a", "date" : "2023-04-05 09:54:32 -0500", "id" : "3d6022f3fa683a1dcd6d42a6e281b6e25ac9d7f4", "msg" : "changing tunable_parameters", "paths" : [ { "editType" : "edit", "file" : "input/tunable_parameters/tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/turbulent_adv_pdf.F90", "src/CLUBB_core/advance_clubb_core_module.F90", "src/CLUBB_core/advance_xm_wpxp_module.F90", "src/CLUBB_core/matrix_solver_wrapper.F90", "src/CLUBB_core/grid_class.F90", "src/CLUBB_core/mean_adv.F90", "src/CLUBB_core/fill_holes.F90", "src/CLUBB_core/mono_flux_limiter.F90", "src/CLUBB_core/clip_explicit.F90", "src/CLUBB_core/advance_helper_module.F90", "src/CLUBB_core/parameters_model.F90", "src/CLUBB_core/diffusion.F90" ], "commitId" : "49ec5990089b7f9728eb6707a2b653bbeca94c81", "timestamp" : 1680716686000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Advance xm wpxp gpuization (#1077)\u000a\u000a* Initial commit for GPUizing advance_xm_wpxp.\u000a\u000a* GPUizing fill_holes_vertical\u000a\u000a* Adding Skthl_zm to the update host list, I missed this in the last PR. I noticed this by comparing results with and without managed memory, now I've checked BFBness with arm, mpace_b, mc3e, and gabls2.\u000a\u000a* Small GPU fixes (#1076)\u000a\u000a* Fixing small things that I caught by adding the default(present) onto acc loops.\u000a\u000a* Moving default(present) to the end because it looks nicer there.\u000a\u000a* Adding default(present) to all acc loop statements. Also adding azt to a copyin statement, which was missed previously. All BFB.\u000a\u000a* Incemental update, not well tested yet.\u000a\u000a* Removing some copies and making the sclr_dim change.\u000a\u000a* Fixing a bug that only seemed detectable with astex_a209. We need to pass only single arrays to functions, calling ddzt( nz, ngrdcol, gr, rho_ds_zt * K_zt_nu ) was resulting in rho_ds_zt * K_zt_nu being evluated on the CPU, but the values were only valid on the GPU. So we need to evaluate that expression on the GPU, save it into an array (currently K_zt_nu_tmp), then pass that to ddzt.\u000a\u000a* GPUizing calc_turb_adv_range\u000a\u000a* GPUizing mono_flux_limiter\u000a\u000a* Cleaning up data statments and a couple other things.\u000a\u000a* Updated for some different options.\u000a\u000a* More updates needed for various options.\u000a\u000a* Reverting accidental flag change\u000a\u000a* Should be the final changes, all options tested now.\u000a\u000a* Replacing some comments in monoflux limiter, and also modifying it to make it BFB on CPUs. Also changing incorrect error conditions on tridiag.\u000a\u000a* Adding max_x_allowable to update host statement, missed previous.\u000a\u000a* Properly naming tmp variables and variables calculated from ddzt and ddzm start with ddzt_ and ddzm_.\u000a\u000a* Replacing constants with named ones from constants_clubb.\u000a\u000a* Replacing hard coded numbers in lhs variables representing the number of bands they contain with fortran parameters.\u000a", "date" : "2023-04-05 12:44:46 -0500", "id" : "49ec5990089b7f9728eb6707a2b653bbeca94c81", "msg" : "Advance xm wpxp gpuization (#1077)", "paths" : [ { "editType" : "edit", "file" : "src/CLUBB_core/advance_helper_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/parameters_model.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/clip_explicit.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/turbulent_adv_pdf.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/matrix_solver_wrapper.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/fill_holes.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/mono_flux_limiter.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/diffusion.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/mean_adv.F90" }, { "editType" : "edit", "file" : "src/CLUBB_core/grid_class.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "compile/config/linux_x86_64_nvhpc_gpu.bash", "run_scripts/diff_netcdf_outputs.py" ], "commitId" : "f20b355f2ce4e686d8f3392ad148341f08fd6acc", "timestamp" : 1680726531000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Small improvements to diff_netcdf_outputs.py, removing reliance on ncdiff, now it is entirely in python. Cleaning up linux_x86_64_nvhpc_gpu.bash, removing outdated parts, improving default parallel compilation, changing pgfortran to nvfortran.\u000a", "date" : "2023-04-05 15:28:51 -0500", "id" : "f20b355f2ce4e686d8f3392ad148341f08fd6acc", "msg" : "Small improvements to diff_netcdf_outputs.py, removing reliance on ncdiff, now it is entirely in python. Cleaning up linux_x86_64_nvhpc_gpu.bash, removing outdated parts, improving default parallel compilation, changing pgfortran to nvfortran.", "paths" : [ { "editType" : "edit", "file" : "compile/config/linux_x86_64_nvhpc_gpu.bash" }, { "editType" : "edit", "file" : "run_scripts/diff_netcdf_outputs.py" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/advance_xm_wpxp_module.F90" ], "commitId" : "c0fb204097dab9c58399ebd3526835db482899cc", "timestamp" : 1680733435000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Small tweaks to fix some GPU bugs. Some variables were uninitialized on the CPU while we were saving them. This could only have been caught by comparing consecutive runs and checking _zt and _zm files, even then few cases were having problems.\u000a", "date" : "2023-04-05 17:23:55 -0500", "id" : "c0fb204097dab9c58399ebd3526835db482899cc", "msg" : "Small tweaks to fix some GPU bugs. Some variables were uninitialized on the CPU while we were saving them. This could only have been caught by comparing consecutive runs and checking _zt and _zm files, even then few cases were having problems.", "paths" : [ { "editType" : "edit", "file" : "src/CLUBB_core/advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/grid_class.F90" ], "commitId" : "34329990202f44999b237263136111b0086963c4", "timestamp" : 1680734063000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Fixing a labelling error in redirect_interpolated_azt_2D and similar procedures, since this interpolates to zt the input should be zm. I think this was my fault, so I cleaned all the zt2zm and zm2zt things up to make it a little nicer. Also ordered the routines _k _1D _2D to make it easier to jump around, it was a bit confusing as they were out of order and the typo really made it hard.\u000a", "date" : "2023-04-05 17:34:23 -0500", "id" : "34329990202f44999b237263136111b0086963c4", "msg" : "Fixing a labelling error in redirect_interpolated_azt_2D and similar procedures, since this interpolates to zt the input should be zm. I think this was my fault, so I cleaned all the zt2zm and zm2zt things up to make it a little nicer. Also ordered the routines _k _1D _2D to make it easier to jump around, it was a bit confusing as they were out of order and the typo really made it hard.", "paths" : [ { "editType" : "edit", "file" : "src/CLUBB_core/grid_class.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "utilities/autocommit_message_maker/autocommit_message_maker.py" ], "commitId" : "6d1ddfc80e3c21483a2a90d03c0f5581c0dd7dff", "timestamp" : 1680816187000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/cernikt", "fullName" : "cernikt" }, "authorEmail" : "tjcernik@uwm.edu", "comment" : "bug fixes for the autocommit message maker code\u000a", "date" : "2023-04-06 16:23:07 -0500", "id" : "6d1ddfc80e3c21483a2a90d03c0f5581c0dd7dff", "msg" : "bug fixes for the autocommit message maker code", "paths" : [ { "editType" : "edit", "file" : "utilities/autocommit_message_maker/autocommit_message_maker.py" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "src/CLUBB_core/parameters_model.F90" ], "commitId" : "0eca2146266b52e407a4feac444e1be8923fa3c4", "timestamp" : 1680842443000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Making it so sclr_tol is set to 0 before the specified sclr_tol_in. This is so that it is initialized to 0 in the case that sclr_dim = 0, since now we are setting it to have a minimum allocation size of 1 and would otherwise have a garbage value. This is what broke the clubb_openmp_gfortran_test.\u000a", "date" : "2023-04-06 23:40:43 -0500", "id" : "0eca2146266b52e407a4feac444e1be8923fa3c4", "msg" : "Making it so sclr_tol is set to 0 before the specified sclr_tol_in. This is so that it is initialized to 0 in the case that sclr_dim = 0, since now we are setting it to have a minimum allocation size of 1 and would otherwise have a garbage value. 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